Array 1 38694-40523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDVE01000025.1 Pseudomonas aeruginosa CF_PA39 scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38694 28 100.0 32 ............................ TTACATTTTTTTGATAAAGTCGAGTACGGCCT 38754 28 100.0 32 ............................ TGCATGGAGTCGCAGACGCCTACACGCATCAG 38814 28 100.0 32 ............................ GCCTTCGGTCGCGTCGGCCGCGTGCGCCGGTT 38874 28 100.0 32 ............................ AAGCTCAAGCAGTCGATCAGCGGGCCGGTGGC 38934 28 100.0 32 ............................ GTACCGGCTCGTCCCTCGCCCGGCCCGGCCAC 38994 28 100.0 32 ............................ AAGGACAACCGTAGCCTGATGGACGTTGCGCT 39054 28 96.4 32 ......G..................... AGGTCCAGGTCGGTGCCGAGCGGGATTTCCTT 39114 28 100.0 32 ............................ AGCTCGGGCGGCAGCACCACCGGTCGCCGGTC 39174 28 100.0 32 ............................ TGCACGTCGAGCCATGCCTGCGGCATCTGCCC 39234 28 100.0 32 ............................ TACATCGACGGCCTCGGCACCCAACAGCCGGT 39294 28 100.0 32 ............................ GGCGCGAAAGCCGTTCCAGCCGAACTTGTCAG 39354 28 100.0 32 ............................ AGGTTGCGACGGGCTCGCGGAAACCTGCGACA 39414 28 100.0 32 ............................ TGTTGACGGCGGCGCGAGCGGCGGCCGCGTCC 39474 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 39534 28 100.0 32 ............................ TCGTTGACATGAACGCAACGCAGGCGGCCATC 39594 28 100.0 32 ............................ TCGGGCCTTCCTCGCGCAGGCGCTCCACTGAG 39654 28 100.0 33 ............................ ACCATGGCGGCACGGCCAGGTGCGGCGACTTAT 39715 28 100.0 32 ............................ ATGACGAGCCCTTACCCAGGCTCGGAGAGCTA 39775 28 100.0 32 ............................ AGGTTGATTCGGTAATTCACGATGTCGCCGGA 39835 28 100.0 33 ............................ ATTGACCAGGTGTTCGCGAAGCGCATCGATCAA 39896 28 100.0 33 ............................ ATTATGCGAGGCGACCCTTTTGGTACCTCTTTG 39957 28 100.0 32 ............................ TCATAGTTGAAGGCGTCCTCGCCGCGCAGCAT 40017 28 100.0 32 ............................ TGGCGCGTCGCGGATCTGCATCCGTACCTCGG 40077 28 100.0 32 ............................ TTCGAGATCAGGTGCATGAGCATTTCGCGCAG 40137 28 100.0 32 ............................ TAGAGACGCTGGCAGAGCTGGCCACCTGGTGC 40197 28 100.0 32 ............................ GCTCGGCTCGGCCCATGCCGATCCAGCGATGA 40257 28 100.0 32 ............................ GCGTATGAGTATTCGGGTCAACGTCCGGCTTA 40317 28 100.0 32 ............................ GGCGGTATAGGCCGGCAGTTGGCCGTCTGGGT 40377 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 40437 27 89.3 32 A....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 40496 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49436-49048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDVE01000025.1 Pseudomonas aeruginosa CF_PA39 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49435 28 100.0 32 ............................ ACAAGGTCGTCGCGCAACTGCCTGCCGCGCTG 49375 28 100.0 32 ............................ AGCACGATCTTATCGGCGCCGGGCGTGTAATA 49315 28 100.0 32 ............................ ATCAGCACCCGGCGGCATGGCCCGCGCCGTGC 49255 28 100.0 32 ............................ ACACCAGCAGGGCGACGGTCACAGCGGCATCC 49195 28 100.0 32 ............................ AGTGACTTCCAGCAGAGTGCGGAGCTGGTAAG 49135 28 100.0 32 ............................ CACCGCCCCGCCTCTACTTACAAACCGCCTTA 49075 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62318-60967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDVE01000010.1 Pseudomonas aeruginosa CF_PA39 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62317 28 100.0 32 ............................ GTATCGACTGTGATGGATGCGACAAGCACCGC 62257 28 100.0 32 ............................ ATCTTGCGCAGGGCGTAGACGCATACCAACCA 62197 28 100.0 32 ............................ GGCATCCTCGACATGCTCGACGGCCTGCCAAT 62137 28 100.0 32 ............................ CTGCCCTCTGACCCTCTGGCGAAGAGCGGGAT 62077 28 100.0 32 ............................ GAAGGGAGAATGCGCAGACCGGAAAATTGCAG 62017 28 100.0 32 ............................ TCGCCGACAATGTGGCGTAGCTCCCAACTCGT 61957 28 100.0 32 ............................ ATTCATCCTGCGGCATACGCGAATCACAGATG 61897 28 100.0 33 ............................ ACCTTCGGACACCAGCACAACACGCGACGTCTT 61836 28 100.0 32 ............................ TGGCTGATGTTCTCCATTTGGCCCGGCCCATA 61776 28 100.0 32 ............................ TTGGAAAAGCGCCCGCTAGTGTCGAGCAGCTT 61716 28 100.0 32 ............................ GAGCGCACCTGCCTGTCCGAACGTGCCGTGCA 61656 28 100.0 32 ............................ GACGCGATCTGGATGGCGCCTTTGCCGTTCAC 61596 28 100.0 33 ............................ TAACTTCCCGGATATTCAGCCGCGAAAACTTGG 61535 28 100.0 32 ............................ TGGAGCCGGCCCAAATCTCGCCACCTTCAACT 61475 28 100.0 32 ............................ ACCGAGGAAGCCGAGCGCGTCGTTCTCCAACT 61415 28 100.0 33 ............................ ATCGGCATCAAGGGTTCGCTTCGCCGGCATCCT 61354 28 100.0 32 ............................ AGGGAACACGGTATGGAACCGGCCGTGGCCGC 61294 28 100.0 32 ............................ ATCCGGCCTCCGGATAACATAGACCTGCTTGT 61234 28 100.0 32 ............................ ACATGCCGAGCAGTTCTTTCCGCCCAGGCACG 61174 28 100.0 32 ............................ TCTTCAAAGGTCAGGCCCCGGTGCGCGAGCCA 61114 28 100.0 32 ............................ GCGACCCCAGCGCCATCCTGGTGGGTGGGTTC 61054 28 100.0 32 ............................ AGTACCTGCCCGAGCGATCACGCCACACGCCG 60994 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAAGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGAATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGTCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //