Array 1 101581-101731 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLV01000049.1 Streptomyces albidoflavus strain CR13 Scaffold19_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101581 29 100.0 32 ............................. CAAGGCGAAACCTGCGCGGTCGCCGCCGGCGT 101642 29 100.0 32 ............................. TTCGCCGTCGCCTGCGGGTCGAGCAGCCAGCG 101703 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCCGGCACCCACCCCTGCGTCGTCCCCGCCCACCACAGAACCCCTCCCCGTAGCCCGGTCTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGTTGGGCGTCTTGGGGGTGAGGGGGTGGGGGTGGTGTGGGCGGCTGGTACGGGGGTGGGGCTTCGGGGGGTGTGGGCGGGGGTGTTCGGGTGCGTTCGGGTGGGGCGCCGAGTGGTTCGGGGGAGGAGGGGGCGCGGCGGGGCTGGAGTTGACGCGGGGGGTTGTCCTGTTCCGATCCGTAGGAGCTACTGGGCGAGCCGGGTCGGAAGTTGGGGGCTTGGTTTCACTTGGGTGCGACGTTGCTGGGGGTGCGCTTGAGAAGGCGGAGTCAGGTGGGGGGAACTGGGGGAGGATGGGTGGGCTGATGGATCGAGAGGGGGGCGTTATGTGTCTTTCGCACGAAAGGCCGGAATCGGCGAAGCTTGCGGGAACGGGTGGCGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CGTCGGGTCGACGTCGCTCAGCTTGATGGGGTTGTGCTCCCCGCGCCCGCAGGGCAACTCACCCGGCCTCCCCAGCTCTGCCCACGCCCCCTCACGGCTCGCAAACCCCACCCTCCACAGCAGCACCCTCCGCCCCCGCGAAAAACCCCACAACCCGCCCCGCGCACCCCCCACCAGCCATCCCTCCATGTTCCCCGTCCCCCACCACCAACAACGACCCCCCAGTTCGCGCCCGCATCGCACGGGCCCAGGGCAACGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAAGGCCCGTCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGCCGGCAAGCCCGCGCACGTGCTGGTTCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGTGCGGCGTTCGCCGTAGGCCGACCACTGTTCGGCGAACGAGGCGGCGTGGGTCACCTGGGAGCAGAGCAGTGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52801-53077 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLV01000029.1 Streptomyces albidoflavus strain CR13 Scaffold29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 52801 28 100.0 33 ............................ GATCCGCCGCTTGTCCGCCTTGGGCGCGACCTT 52862 28 96.4 38 .........A.................. GATCTGGCGCGGCGTCGGCGGCGGCCTCTGCGGATGGT 52928 28 96.4 33 C........................... GGCATCCTCCGCCAGCTCCGGATCGGCCAGACC 52989 28 89.3 33 ..A........A............T... GGTACGCGGGCTGGCGTGCGACCAGTACGTCAG 53050 28 75.0 0 C...CT......T.C....C.....C.. | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 91.4 34 GTGGTCCCCGCGAGGGCGGGGGTGGTCC # Left flank : ACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTGCTGAAAGCCGAACGGCCCGAGGAGCTTTTCACCGCCATCAGGGCTGCGGCTTCGGGGCGTACGGCGTTGTCGCCGCCTGTGGCGCAGAGAGTGATGACTCACTTGCGGAACCCGCAGCCGGAGCTGACGCCGAGGGAGCGGGATATTTTGCGGCACCTGACGCAGGGGTTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGGCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGAGGCGGTTGCTGAGGTGAGGGGGTGGCGGCGGGGGTGGGTTCGTGGATTGGGGGGTGTGGTGGGAGGGGGGTGCGTAGGTTGGGGGTTGAGAGGGAGGGGAACGGTGATGGGTAAAGGGATGGCAAAGGCGGTCTGAAGGTGCAGGTCGGGAAGG # Right flank : CCCGCCAGACCGGACTGCTGACCCCCCGCCCAGCTCCCCAGCCGAGCCGACCGAAACCCATCCCGCCGAAGCCCAAGCACCCCTAAGACCGCAAAAGCCGCATACCCCACCCCATCCCCGCCCTGCCCGCGCGTCAGCCCCACCAAGCCCCCCCCCCCGCATCGCCCACCAAACCACCCCCGCCAAAACACCCCCGAGACCGAACAAAACGCCCCCGCCAACCGCAGCCACGCCAACCACCCTCAACATCATGAACACACGATGGTCACAAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCATCGCTGTAATCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAGC # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159828-159978 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLV01000053.1 Streptomyces albidoflavus strain CR13 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159828 29 100.0 32 ............................. CGGGACGCCCCGTGGTGAAGGTGCCCCTCGCC 159889 29 100.0 32 ............................. GAGGACCCGCGACGTACGGTGCGGCTGTTCGT 159950 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGTGCCGCTTTTTGTTGTGCCCGGGCCTCACTTGCCGGCCGGGCTCGGTGGCCTCAAGCGCCGGCCGGGCTGGTTTGGCCTCAAGCGCCGGCCGGGCTGGTTCGGCCTCAAGCGCCGGCCGGGCTGATGGGGGTCGTGTTCGGGGCGCGGGCCGTCGGCCTGTGCGGTCACAGATGGCCTCAATCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGACGGTGGCCTCAACTGCCGGTGCGGTTGCTGGGGGTTCTGGGAGAGGATGAGCGAGGCTTCGGGTGTGACAGGGGAGGGTGTTTGCTGACATTCAACCTAATTGCGGCAATCTCGCAAGCTTGCAGAAATGGGCTGCACCGCTAGGCAAAGCCGCAGGTCATCGAGG # Right flank : CATGCGTGCGCAGCTCACCGCCGACTGCGTCGGGTGCTCTCCGCGTCTGCGGGGCCCAGGGAACCCAAGTCCCCGGCCTGCCCAGTGCCACCGGCGCGCGAGGCGCCCCGATTCCGGCGGTGGCAGCCCAGTGTCAGCCCCCTCAGAACGCCAAGATCGTGACCGTGGCCGCGTAGATCACCACCAGTAGGGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108848-108998 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLV01000018.1 Streptomyces albidoflavus strain CR13 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 108848 24 100.0 39 ........................ TCTTTGACCGGCAGGTCACATCGGACCGGCGCACAACCC 108911 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 108975 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTCCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGTGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCTCCCTGGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGAACCTGGCCATCGACCGGGCGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAAACGCCGGCCAGGCTCAGTGGCCTCAATCGCCGGCCGGGCTACCGA # Right flank : AACCCCCCGGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGAAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 343655-343381 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLV01000056.1 Streptomyces albidoflavus strain CR13 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 343654 29 100.0 32 ............................. CGGTCCAGCTCCCGCGAGGCGCCCCGCACCAT 343593 28 96.6 32 .................-........... CGCATCCAGGTGTTCATCCGAGCCCTGCTGAT 343533 29 96.6 32 ............................G ACCTTCTCGGCGCCGTCGGCGAGCGACTCGGC 343472 29 96.6 32 ........................C.... TACGAGGACGTGACGATCAACGGCAACACGTT 343411 29 93.1 0 ...........A................G | GC [343392] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTCGTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : GGTCGAGCGCGCTGTCGGCGCGGGGCGCTAGCCTGCCCTCATGTCCTCCCTGCCCGCAGCCCGGCCGCGCCCTGCCGCCAAGGTGAACGCGGAGATCCGCGCGCTGATGCTGCGCTCGGGCGGCCGCTTGGCTGCCGGCGACCGGGCCCGGTACGTGGAGCTGATCGCGGAGTGGGCAGAGGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGGATCCGGCCGTGGACATCCCCGACAGCCTGATCGACCTCCAGCGCGCCGCCGACGCCGAGTGGGCGCGCCTCGCCGAGCTCACCGACAACGACGAGCGGGAGCGGCAGCGGCGCGTCTGGTTCGAGGCGGGCGCCCGGGCCCAGGCCGCCATCACCGAGTGGGCCGTCGCCGAGAACAAGAACCGGTACAAGGTGGAGAAGGCCGTGCGGGAGGCCGTGCGGCACCCGGAATCCGGAAGCGACTGAGAACCGGCGCCCCGCCCTGTAGCGTCCCAGGTCAGGAAGC # Right flank : CCATCCGTGTCCAGCTCCTAGGTGGGCAGCCGACTCTCCTGCTACTGCGGGGTGGCCCGCCGTTGGTCTTCGGCTACAACGTCTCGAGCGGTTCTCCCCGCGGCCGCGGGGTACGACGAAGCGCCCCCGCCGCCCTGCATCGGCAGGGGGCGGGGGCGTTGTCAGTCCTCGTCGTCGGGCCCGGGCCACGGGCCGTCGGGGTAGACCGGCTCGCGGAACGGGTCGGCCGACGGGATGGGCACCGGGTCGGCGAGGCCGAGGGCGGCCAGGGCGGCGGTGTCTCCGGCGGCCGGGTCGATGCGGCGCTCGGCCGGACGGGGCTCAGGGTCGGGCATGAGGGTCCCCCTCGGGGCGTTGGGCGCGGGTCACCATCAGGGTCCGCTGCGCGAGCAGGCCGGCGACGAGCAGCAGCAGGCCGGCGCGCACGATGCGGAGCACGGTCGCCGGGGTCCCGTCGAGGCCGACGATGGTGATGACGACGGTGTACAGGCCGAGCAGGC # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //