Array 1 118995-118104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024592.1 Porphyromonas gingivalis strain KCOM 2803 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 118994 30 96.7 36 A............................. GTTATCCTCGCTGTAAACGATCGATGCTTGCGTATC 118928 30 100.0 35 .............................. CGCATGACGGGGTGATCTCCGACGAATTGCCTCCT 118863 30 100.0 37 .............................. AGAAACTGTTTGTAGTTCTCATTGCTCTCCTCCTTCC 118796 30 100.0 36 .............................. CGGACGGAGGGGAAGCGGCTTTGCTCGCGCAAATAG 118730 30 100.0 37 .............................. TCCAGCAAATGTGCTATTTGCCTTTTACGTCCTTTTG 118663 30 100.0 37 .............................. TTTTCAACAACTCATGAATTTGATATCACGTATAAAG 118596 30 100.0 36 .............................. TTGTATCAATTACATACCTGTCGAACTGTCAAGGTT 118530 30 100.0 34 .............................. TTGGCGTACTATCGAGTTGCCGGACTTGTGCGCG 118466 30 100.0 35 .............................. TCCGCTTTCAGCTTGCTGGCAGCGAGGTTAGCTGT 118401 30 100.0 36 .............................. TCTTCAGGGCAGTGTAAATGCACATAATATCACCCT 118335 30 100.0 37 .............................. ATGAAGCAGCTGGAAAACAAGCACAAGGTGCTAAGAT 118268 30 100.0 40 .............................. CCGCCCCCCGCCTTTGGCCGGAGGCGAGGCTATCTGCCGC 118198 30 100.0 35 .............................. CCCCCGAGGTCTCTATCCCCGCCGAGCGTGCCGTC 118133 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 99.8 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAGCCATGATGAGAAATTATCGTGAGTATGCACCTGTAGAGCTCGGAGGTTCGCCCGTGCAGGAAATATTGGACTATGCTTCTCTCGAAGGAAAAGATTTCACAAGAGGAGAGAAGTTTTCACTCGATATGCCTACAACGAGCAATGTTCTTCAGTACAAGACCGAGGATGGCACCAAGGTTTCCATCCGTCCGTCAGGTACTGAACCGAAAATCAAGTTTTACATCGGAGTTCATTTCTCGGTCGCTAATGAGCAGGAATTAGACCGGGCCTATATAGTAGCAGAAGAAAAGATTGCTACCATCCTCCACGACCTCGGTGTCTGATCTGCTTTTTCGGCTATAGATTAAGATAAATCAAGGGCTGCACCACAAGGGACTCTCCCCTTTGGTACAGCCCTTAGTCTACTTTTTTATTTGTATGATATCCCCTATGCCTAAAAAACAAGCCAAATAACCCCGAAATTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGTGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 151553-151005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024592.1 Porphyromonas gingivalis strain KCOM 2803 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 151552 37 100.0 35 ..................................... AGCGATTCGGCATTTAGAGAAAGAACAAGAAAAGG 151480 37 100.0 36 ..................................... AAATCAATGAATACGTCTAATAAAACTGGCATTGGT 151407 37 100.0 35 ..................................... CCGTTACCATGAACTTCCCGACTCCATTGCCTGAA 151335 37 100.0 39 ..................................... TAACAGGAAAATATATTTGTTTGGTTTTAGGGCAAAAAA 151259 37 100.0 37 ..................................... CTGGTAGTATAAAGATTCACATCTTTGAGAAATCTAG 151185 37 100.0 37 ..................................... AAAAAACAGTCCATCCCCTTGTTCCTGGGTGTCCCGT 151111 37 100.0 33 ..................................... ACAAAAGGCAGATCGTCTGAATTCAGACAAAAA 151041 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : ACGAGCCTGTCCCCCCGAAAACGACCGAACTTTCCTTTACGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATCAGT # Right flank : TACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAAAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATGAGATTTCCTGATTTTCCGTTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTTCGAAAAACTAACCCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAAAAACACCTTGTCTCTCTTGGCAGTCTGTGAGGTAACAGCCTCTACCAACTTGTCCATTGTCAGCTCTCGCAGGCTGCAGATGAATACCGACTTATTGATGCGTATACCACACTGCTCCAATATCCGTGCAACCTTACGTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 454186-453753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024592.1 Porphyromonas gingivalis strain KCOM 2803 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 454185 37 100.0 29 ..................................... GTTGATACGATTGGCAAGATGCTTGACTA 454119 37 97.3 29 ....................................C AAAACAATTTATTGGAAATCTTCTAAAAA 454053 37 97.3 29 ....................................C TTCTATTAAAGATTTCTTCAAATCAAAGG 453987 37 100.0 29 ..................................... GAGGGACTTCGTGTCGAGAATGGGGAGAT 453921 37 100.0 29 ..................................... GAGACAGGGAAATTTAGCCCGGAGCAGTC 453855 37 100.0 29 ..................................... GAGAAGAAAATAGAAAGGAAGGCGGAGGA 453789 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.8 29 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACA # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACA # Alternate repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1750771-1749813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024592.1 Porphyromonas gingivalis strain KCOM 2803 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1750770 46 100.0 30 .............................................. CTCGTAATTGAGGAAGCGTGGAAAGCCATT 1750694 46 100.0 30 .............................................. CCAATAGAGGTATCCCCGTGTACGAAGAAC 1750618 46 100.0 30 .............................................. AGCCGAGAGGATGGTTGTGTCGTCGCGACT 1750542 46 100.0 30 .............................................. AGGCCGCAGGCGAGGTAAAACTTCACGGCT 1750466 46 100.0 30 .............................................. AAACGACCTACATTTTATATCCGGGGCGGT 1750390 46 100.0 30 .............................................. AAGAGAATTATCAAAGAAATTCTTTCCCCA 1750314 46 100.0 30 .............................................. TCCCAACGCTCGTTGTTGATCCATTTATTG 1750238 46 100.0 30 .............................................. CTGGAATCTAATTCGCAGGAGGTCGATTAT 1750162 46 100.0 30 .............................................. CTGGTCTTTGGCATCATTGCTGTGATAGGC 1750086 46 100.0 30 .............................................. GCGAAGGTGTGAAACCGTCCGAACCTCCGC 1750010 46 100.0 30 .............................................. GAAACAGTCGACACCAACGAGCTGAAGCGG 1749934 46 100.0 30 .............................................. GATACGGATAAGCTAAAAGAGAAAAAACTT 1749858 46 97.8 0 ...........................................C.. | ========== ====== ====== ====== ============================================== ============================== ================== 13 46 99.8 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCTATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGATTTTTCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTCTTACTCACAACCACCCTCTATGTCCTGTATTACAGGTGATTACTGGGGTTGT # Right flank : GAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACAAAGATGAGTTTGGAATGATTCCAAATAAGCATCCATGGAGAAGAAAAAAGCAAGGGAAAAGTGGAGGGAAAAGGAACTGCCACGGATCGAAATACCACTTAAAACAAGTGAGACAACGATCTGCATATAAAACATTTTCAATTTATATATAAATCGTTTTTGATAAATATATAGATCGTAAGTGATTTGTATATAAATCGTGGGCTCAAAAAAGCCTTTTCCGAAGCTGATATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCCAGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCTTGCTGCATGTGATTCGATGTAGCTGCACGATTCCCCTCTACAGTCTCGGACCGGATCGAGGACTGTCGCTGCTGTGCTGAGGGATCCGAATAGGAGCCTGTTCGGGCTTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //