Array 1 47015-46649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJER010000003.1 Campylobacter coli strain 2019/2001 NODE_3_length_213249_cov_112.375007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47014 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 46948 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 46882 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 46816 36 100.0 30 .................................... AAAGCATCTCTTAAATCACTATCTTGCAAA 46750 36 100.0 30 .................................... TTATAGTCGTGAAACAAGGGTTGCAATAGG 46684 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACGCATTTGCAAACAAATCAAAATCTCAATGGACTCGTCTGTAACCGCTATTGCATATGAGGGATGGCTAAATTTATATGATGTGTTCTTGAAATTCGTTTCGAGCGACAAGAAAGAAATTATTAGAGGGTCGGAGAAACATTTAAAAAACAGTCAGAAGAACCTGCACAAAATACATCGAAATCGCAATAACGGTTATTCAAAGACAAAAAGTTATAAAAAAAATAGTGAAAAAAAATAATGAAAAACGGATATTATTTATTTGCCTATGTTGAGATAAACAAATATGCTAATTACTACCAAATTGATACTAAAAGGCACGATCAAAATATTTCATTATGGGAATATTTTGATGGAAATTTGACATTATTAAGATATTGGGAACTTGAAAGGCTATCAAGAATTAAACATCATAACAAAGCATTTTCGACAAAAGAACAATTCATAAAATTTGTTAATCAGCTTTTATCTCAATTTGATTTAGATGATTCTAAATTGGT # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 48488-48254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJER010000003.1 Campylobacter coli strain 2019/2001 NODE_3_length_213249_cov_112.375007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48487 36 91.7 30 .GG...............T................. TGCCTTTAAAAGCTCGCAAGATGCTATGAA 48421 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 48355 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 48289 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TCAAAACCAGTGGGGCTAAATCAATTTAGGAAAAACACAAACAGAACAACTATATAAGAAGCGATAAGGAGACACTTATGAGGATCGAGCATTCACAAAATTTTTTACATAGCAAACGCCTTGTGTCGGAGTTGCTATCAAAAAGCAATATAACAAGCGAAGATACTGTAATTGAAATAGGCCCCGGTAAAGGAATAATTACGGAAGAATTATCAAAGAAATGTGGACAAGTTATAGGAATTGAATATGACAAAGAATTAGCACATTTGTTGCAAGAATCTTTCGCGAACAAATCAAACGTCAAGATTATCGAACAGGATTTTCTTAAATACAAATTGCCTAACAATGGAGTTTACAAGATTTGTGCGAATATTCCTTTCAATTTGACTGCGGACATCATGAAGAAGGTGTTGGAATTTGAAAATCCTCCAACTGATATTTACTTTATTATGCAATATGAAGCATTTTTGAAATACGCTGGAGAGCCGTATTATAACGAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //