Array 1 6797-8323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPCS01000033.1 Listeria monocytogenes strain FSL T1-0946 contig000033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 6797 29 100.0 34 ............................. CGAGCAATAGACTCTCGAACATCAATACCATACA 6860 29 100.0 36 ............................. AGAAGTTTGCCCCCTGCGCCTAAGAGTTTTCCTAGC 6925 29 100.0 36 ............................. CAATTTGACGAAAGAAACAATGTGAAGTGGTATTCT 6990 29 100.0 36 ............................. CCTAAAGACTTACATCCACTTGTTTTCCAGAGTTAT 7055 29 100.0 39 ............................. TTGCATTAATACTCATTTCTAAGCTTCTAAGTTCATTCA 7123 29 100.0 36 ............................. CAAAATAAATAATATTGAATAAGCTGAAATATTTTT 7188 29 100.0 36 ............................. TTGACACATCAAATGTAAATCCGCTAAACAATTCTT 7253 29 100.0 37 ............................. TCCGACACCACCCAAAAAGCCAATGCAGTGCTTCAAT 7319 29 100.0 34 ............................. GAAGTAGATGTAATAATTTTCAAAGAAGCTTTGA 7382 29 100.0 36 ............................. ACATTTTGTACGCACCACGCTTGACGGTCTGAAACT 7447 29 100.0 35 ............................. AGCTAAACAAGTTCTTGACTGCTCTTCTTAATTCC 7511 29 100.0 37 ............................. GTTATATCTTCTATTTGCGTCGTTTTTCCGTCATAAA 7577 29 100.0 35 ............................. CGAGTTAGGGTTAGCTACTCCCGTTAGTCTTTTTA 7641 29 100.0 37 ............................. ATAATTCTGTGAACAAATACTCTTTTTCCTTTAATAG 7707 29 100.0 36 ............................. ATTTTCGATGGCGGGCATGAAACGACACTAGCTTTT 7772 29 100.0 37 ............................. CAATACCCGCTGGGTTTAGACCTCTAGCAGGTAATCA 7838 29 100.0 34 ............................. GATGGAAGTATTCGTGTGAGTGTTCTGGCATACG 7901 29 100.0 36 ............................. TCAGCTCCATCAATGCTTTTTGATAGCACTTCTAAA 7966 29 100.0 38 ............................. GTACTCCATCGGCAATGATAATCACATCCGAAGTACCG 8033 29 100.0 36 ............................. GAAAATAAAAGAGATCGAAAAACTAAACGAACAAGT 8098 29 100.0 37 ............................. AACCATCTGATGGATCAATGGGGAATGGAGTTTTTAC 8164 29 100.0 36 ............................. TTGTAGTCTGCTAGGTCATCAAACGAATCAATACCA 8229 29 100.0 36 ............................. AAGTTAGTTTCAAGGTGGATCGACTTCTTGAAATGG 8294 29 93.1 0 .......................A....C | C [8317] ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAACCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCTGCGAAAAACAATCCCCACGCAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 123799-124543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPCS01000001.1 Listeria monocytogenes strain FSL T1-0946 contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 123799 29 100.0 37 ............................. TCTAAAAATCAAAGGAGGATGTTAGAAATGAATGAAC 123865 29 100.0 35 ............................. TCTGCCGTTTTGATATCATTTTTTGCAATAACATC 123929 29 100.0 36 ............................. GAAGCCTTACTAGTTGAATTATTGCCGCCGGAAGAT 123994 29 100.0 36 ............................. ACGCCTATCTGTGCGTCTTCCCAAACCAAGTCGTGT 124059 29 100.0 36 ............................. AAAAGAGTTGATTGACCAAATCAGAAACACACTCAT 124124 29 100.0 35 ............................. AATTAACAGAAGCGGAAATTAAAGGCATGCAAAAA 124188 29 96.6 37 ................G............ TAGATAGTTTAGACTTTTCGACGTAGTACTTCCGCTA 124254 29 96.6 36 ................G............ GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 124319 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 124383 29 93.1 37 A...............G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 124449 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [124472] 124515 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 94.8 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //