Array 1 5219-6649 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVL01000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU284x NODE_5_length_212302_cov_13.5621, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5219 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 5280 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 5341 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 5402 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5463 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5524 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5585 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5646 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5707 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5768 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5829 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5890 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5951 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 6012 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 6073 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 6134 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6195 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6256 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6317 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6378 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6439 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6500 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6561 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6622 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23412-25576 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVL01000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU284x NODE_5_length_212302_cov_13.5621, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23412 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23473 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23534 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23595 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23656 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23717 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 23778 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 23839 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 23900 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 23961 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 24022 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 24083 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 24144 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24205 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24266 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24327 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24388 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24449 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24510 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24571 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24632 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 24693 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24754 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 24815 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 24876 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 24937 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 24998 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 25059 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 25120 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 25181 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 25242 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25303 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25364 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25425 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25486 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25547 29 96.6 0 ............T................ | A [25574] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //