Array 1 25529-24063 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJR01000068.1 Staphylococcus hominis strain RE2.10 RE2.10_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 25528 34 100.0 37 .................................. TTATTTGGTAATTCCATATAATCAGTAATATCAATAT 25457 34 100.0 38 .................................. GCTTTTTGTGTGTGAATAAATCGCTTTTAATTCTGTAT 25385 34 100.0 38 .................................. CCGTCATGGTCTAGCATTTCAATATTAAAATGCTTGAT 25313 34 100.0 36 .................................. ATTTCTTGAATTTTTTCTTTTACTAACATTGTTAAT 25243 34 100.0 38 .................................. TGATATAGCGTTTAGCACCTTTACCAAATCGATACAAT 25171 34 100.0 37 .................................. TCTATGTGTTTTGTTCTCTATAACGTCTATAATGCAT 25100 34 97.1 38 ...............A.................. TTATAATCACCATAGAACGCCATGTTTAAAAGGTTTAT 25028 34 88.2 37 ........C......G.A..T............. TCTTCAGGAATAGGTACTGTAACGTTGATTGTTTGAT AT [25023] 24955 33 91.2 38 .........-.T...G.................. AAATTCCCTATTGTAATAGTTGGTATAAGCATATAAAT 24884 34 97.1 38 ...............G.................. ATATAAATAGTTTTCAAGTTCTATAAGTTCGTAAATAT 24812 34 94.1 39 ...............G....T............. GTATGCTCTTTTGTTGCTTTATTTATAAGACCTTTCAAT 24739 34 97.1 37 ...............G.................. TTTAACATTAATTCTTCTTGTTTTCCTAAATTCATGA 24668 34 97.1 38 ...............A.................. TTGGTAAACCAGTAACATTAATACTTGATACTTTAAAT 24596 34 94.1 36 .................A..G............. TTAATTGATGTTTTCATTGCCATTGCGTCGAAGTAT 24526 34 88.2 39 ........C..T...G.A................ TGATAGTAAAATATAAATTATTTTTTTCATTATTCTGGA 24453 34 100.0 38 .................................. TCTTTATCCCACGCTCTAAATTTAGGTATCATCTCAAT 24381 34 97.1 35 .........C........................ GCATTTTTATTTTCAACGATGAGATAAATAATGAT 24312 34 97.1 38 ........C......................... GATACATGAGCTTACTAGATACCATTAATGGTGAAAAT 24240 34 94.1 39 .T.......C........................ AAACCGAGTATGCTTGCAAACGGAGGTTTCATTTAGGAT 24167 34 82.4 38 .........C.....G.A......A...A...C. TCATCTTAATGATCTCAATTAGCTTGGTTAAAAGGAAA 24095 33 73.5 0 .T.......T...-......T..A.AG....T.T | ========== ====== ====== ====== ================================== ======================================= ================== 21 34 94.7 38 TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Left flank : AGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGTACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGCCCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAATTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTCCAAGTGATTTGTCATTATTTTTGACAGCAAATTTTGGCTTTGAAATATTGATGTGATAGGATTTAAAGAGCTATCTAT # Right flank : TAAAAATATATTAGGTTTGATAAAATATTCTGTAAAAAAAAGAGAAACAAAAAAGGGCTTTTATACAAATAATTCTTTGGTATTAAGTTAGAATTAGAAAACTAATACTAAATATAAATAACAGCGAATGGAACGTATATTATTGAGGAATTGGATGCAGTGTAGTGTAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAGTATTTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATATGGATGAAAGCGAAGTGACAACTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAACAAGATTACCATCTAGAAAATGTAGCTTTTAAAAAAACTGAAGATAAAGTAGATCATTCTGTGAGTTTTTTATGTTAATAAGTCTGAACATGGGGATGTAGTATAAATACGGTTTAGTAGAAACTCGCGCCGAAGCTGTAGATGAGATTGACTA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 35006-34252 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJR01000068.1 Staphylococcus hominis strain RE2.10 RE2.10_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 35005 36 100.0 34 .................................... GAAAGTTATTTCATCATGGTTAGATGTCTCAAGT 34935 36 100.0 36 .................................... GTTAAAATATCGCCATCAATTGAAATTGAATATTTT 34863 36 100.0 34 .................................... GTAAAAAATGAAAAAGGTATTAATAACGAACTTT 34793 36 100.0 37 .................................... CACGAAATTTCAAAATCGAATTATCATGAGAAATTCA 34720 36 100.0 35 .................................... AGAATGTAAATTGCTTCGTTTAAATCTTCCGTAGT 34649 36 100.0 35 .................................... TTTTTTCATCGTGACGCTCTTTTTTTAACCTTTCT 34578 36 97.2 37 ..........A......................... CTTAGATCATCATTCAAACTACGTGTCCCGTCCTCGT G [34550] 34504 36 97.2 37 ................A................... ATGAAAGTTGGTAACTTACCGTCTTTCCCTTCGAAAC 34431 36 94.4 36 ..........A...........C............. AGTGATAACAGGCTTTCGTATTTGTCCATTCCTAAA 34359 36 94.4 36 ...................A..C............. CACTTCTGCCATATCATTGATGAGTTCATCACGTTT 34287 35 86.1 0 ..........A...........C.......-...GT | G [34258] ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.2 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : ATATTTTTCTTCAAATGAATCAGATACATATTTTAAAAATATTAGACCTAACGCTACATTTTTATATTCAGCAGCATCCATACTTCCTCTCAATTTATCGGCAGCCTGCCATAACTTTTCTTCAAAACCTATTGTTGTCATTAATAACACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTGGTCACTAATTTTATCTCTTATTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGAGTAATTATTAACATATTAAATGTAGTATACTCTTAATATAAGGAGAATGATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATTTATAAAAGTATCG # Right flank : GTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCCGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAATAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGCTGTTAGTTCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //