Array 1 455215-456707 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHI01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F70H3 NODE_1_length_635507_cov_18.4798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455215 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455276 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455337 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455398 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455459 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455520 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455581 29 100.0 31 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCC 455642 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455703 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455764 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455825 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455886 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455947 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456008 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456069 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456130 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456192 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456253 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456314 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456375 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456436 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456497 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456558 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456619 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456680 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472839-474803 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHI01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F70H3 NODE_1_length_635507_cov_18.4798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472839 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472900 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472961 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473022 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473083 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473144 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473205 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473267 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473328 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473389 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473450 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473511 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473572 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473633 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473694 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473755 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473816 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473877 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473938 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473999 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474060 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474122 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474225 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474286 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474347 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474408 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474469 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474530 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474591 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474652 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474713 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474774 29 96.6 0 A............................ | A [474800] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //