Array 1 347604-350217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLN010000004.1 Listeria monocytogenes strain 2013L-5347 NODE_2_length_355552_cov_99.4188_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347604 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 347670 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 347736 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 347802 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347868 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347934 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348000 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348066 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348133 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348199 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348265 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348331 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348397 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348463 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348529 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348595 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348661 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 348727 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 348793 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 348859 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 348925 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 348991 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349057 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349123 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349189 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349255 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349321 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349387 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349453 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349519 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349585 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349651 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 349717 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349783 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349849 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349915 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 349981 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350047 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350113 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350179 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350204,350210,350213] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //