Array 1 1166908-1165816 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051623.1 Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1166907 36 100.0 30 .................................... AAGTCGTGATGCTATTGATACAGCAGAGGT 1166841 36 100.0 30 .................................... GAGGAATCTCGTGCTTATCCCCGTTCTCGT 1166775 36 100.0 30 .................................... TAGGCAATCGTCCGCAGATGCTTGTATTGA 1166709 36 100.0 30 .................................... AACTCAAAACTTAAAAACACGTAAAACTAT 1166643 36 100.0 30 .................................... AGTCTTTTTGGCAGCGGGTTTTACCTATCT 1166577 36 100.0 30 .................................... ACGAGCATAGCAATTATATGACTGGAATTT 1166511 36 100.0 30 .................................... AACTGCCGCTGGGAAAACGACCGTTGGTGT 1166445 36 100.0 30 .................................... GTACGATAGGCAATTTCTAAAACGTGTAAA 1166379 36 100.0 30 .................................... ACGAAAACGTCGACCAAGAGACTACTGGCT 1166313 36 100.0 30 .................................... CATACTCAGAGAGCGAGTATAAAAAATCTA 1166247 36 100.0 30 .................................... TTGCTCATTCAAGCACCCCACGAATACCAA 1166181 36 100.0 30 .................................... TACAACAACACGGTTAACGACGGGGTCACT 1166115 36 100.0 30 .................................... GCAAAGATATGCGCAAGGTCGGACTATTGT 1166049 36 100.0 30 .................................... GGATAAGTAACTCCGCATAGCCACTAGCTG 1165983 36 100.0 30 .................................... TTTCAACGAGTGGTCTCCATTTTTCAACTT 1165917 36 100.0 30 .................................... CCTTTGGGACGTTATCCTCATCCAAGATGT 1165851 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.7 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1506282-1505720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051623.1 Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1506281 32 100.0 35 ................................ AATACTTTGAGGGCAGAACAGGACTTAGAACTAGA 1506214 32 100.0 34 ................................ AGCCTTGCGACTCAGACACCGCTAGTCTAAATCG 1506148 32 100.0 34 ................................ TTCTACTATTTGGTCAGATATTGCTCTTAGATTA 1506082 32 100.0 34 ................................ AATCTCATTCATCTTTTTGGCATTGTTTTTTGCT 1506016 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 1505950 32 100.0 34 ................................ GCTATTCTTATCAAAATTTAAGTAATTTTGGTTA 1505884 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 1505819 32 100.0 36 ................................ TAACTCTGTCATTTCCCAATTTTTAGTGAGAATCAC 1505751 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.0 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //