Array 1 793828-795045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024724.1 Prevotella intermedia strain KCOM 2837 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 793828 36 100.0 30 .................................... TCCCTTGTGTTTTTTGAGAAATTCGTTCAC 793894 36 100.0 29 .................................... ACCTTTATCTATATCATCTTCTTCTTTAT 793959 36 100.0 29 .................................... TTTTCTTATCTTCTAATAGTTCTTTATTA 794024 36 100.0 30 .................................... CGCCTAAACGCTCATCAAAAGCTTTAACAT 794090 36 100.0 29 .................................... GGTCGTTCCAAGTAAGTGTTAGACTATCG 794155 36 100.0 29 .................................... ATACATTTTATTATTTACTACTTCGTTAA 794220 36 100.0 30 .................................... TACTTAACGAACCAATTATGCTCATCATCT 794286 36 100.0 30 .................................... CTTATTGTAGTAAATATGTTACGAAAGATG 794352 36 100.0 30 .................................... TACTCCGTTTTCATCACTTCCTAAGCATTG 794418 36 100.0 30 .................................... TTCCCTTCTTATCTTTCAATATAACAGGTT 794484 36 100.0 30 .................................... GATTTTCTTTAACGTATACAACAGAACCTC 794550 36 100.0 30 .................................... TTCTTTTATTATACATCCTATTGCTAGGAG 794616 36 100.0 29 .................................... TTTTATCTTCTTATTTTACGTGTTAAATT 794681 36 100.0 29 .................................... TTTTATCTTCTTATTTTACGTGTTAAATT 794746 36 100.0 30 .................................... TATCGCTTTTGTACTCTGTTTCCGTTTCCG 794812 36 100.0 30 .................................... CTTGTTGTTATTTATTTATTTCGTAGTTCT 794878 36 100.0 30 .................................... AGGGTCGTACTCTACGTGGATATGGTCGCT 794944 36 97.2 30 .............G...................... ATCAAGGTTGAATGTCAAATCAACGTCAGT 795010 36 91.7 0 .............G............C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.4 30 GTTGCATCTGCCTTCTGTTTGCAAGGTAAAAACAAC # Left flank : TGCGGAATGCCTTTTCGCACAACCAATATCCAATGTACAATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGTTCGATATTGCTGTGAAACTGAAAGAGGAAGTTAGTAAGGCAGTAGAAAAAATACAGAACGAGGAAGATAACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTTCACTAATATAAAAAGGGGGCAATGTTGCTGATGTTGAATACAGCAAGCACGCCTATGTGCTGTTGCTTACTGCCAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGTCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTAAAAAGAAAGGAACAAAACATATAAAAATCAGACAGTTAGGTTAGGTAC # Right flank : CTTATTAACAAGCAAGGGAATGGAATTGGGGGAAATAAAAATGGAAGGGAGAACACGCCTTTCTATGAGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACTGTCTTGCTGTCAGCGCATTGCAAAACCTATTGTTTTGCAATGTAAAAGTGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTACGGTTTTTCTATGGAATTATCTTTACAAAAACGGAGTGGTTTTACGTGGTGGAAGGTGTAAAGGTTGTGGCGTGGTTTCGGACGGCAGCACAAGGGCGGCTTTGCCGATAGTGCGACATCGGCAAGGGTGGCTGGGGCTTTTGCATCGGCTCGATGCAGTGGTTCGTTCGGTTGTGTTGGCTTCGGTTGATGTGCAACGACGACATGAAAGCCGCTATACAGAGCAAGATAAGATGCTTTCTCATATCGTTAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTTCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1549082-1553587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024723.1 Prevotella intermedia strain KCOM 2837 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1549082 47 100.0 30 ............................................... TTTTTGCCCGTCTGTCAGCTCTAAGCCCAA 1549159 47 100.0 30 ............................................... GGTAGAATGGTTCGGAGGTTATAAATTCTC 1549236 47 100.0 30 ............................................... ATCATGCAATCGAAGATTACGAATTGATCT 1549313 47 100.0 30 ............................................... AGCAGAAGAGATAAATCAGAAGGCGCAGAT 1549390 47 100.0 30 ............................................... TCTTGAACATAGAATAACGTGGAAGATAAC 1549467 47 100.0 30 ............................................... TTTGTGTTAATAACAGTATTGTCTGGAATA 1549544 47 100.0 30 ............................................... TAATGGAGCCGTTATCATCTCCTCCCGATA 1549621 47 100.0 29 ............................................... TGGCAATATCATACACAACGGACAGGGGC 1549697 47 100.0 30 ............................................... AAGGTTGAAATTACTGCTAAATATCTCAGA 1549774 47 100.0 30 ............................................... CACGCAGGGCTTAAAAGTGGCAAATATCCT 1549851 47 100.0 30 ............................................... TTATTTTTTAGATGCTGAATACTGCCCGTA 1549928 47 100.0 30 ............................................... CGTTTACGATGTTCTCACAAATGAGGAGAT 1550005 47 100.0 30 ............................................... GCAATAAGCATACATCAACTACAAGAATAA 1550082 47 100.0 30 ............................................... ACCTTGCTTTCGCTTGCCTTGTTGCGAGTG 1550159 47 100.0 30 ............................................... TGATTTAGAATTTCTTGGAAGCCGTGAGGG 1550236 47 100.0 30 ............................................... ACAAGGACGGCAAGGAAGTCAAAGAAATTG 1550313 47 100.0 30 ............................................... AGGCTGCCATGGCACGTGCCTACGAAAAGC 1550390 47 100.0 30 ............................................... ATATTTGGCGACGATAACCCGCTATAATTA 1550467 47 100.0 30 ............................................... ACGGCACGTACATACGAAGCGGCAACTATA 1550544 47 100.0 30 ............................................... TATGCCTTGACTTTGAAACACTCGAGGAAA 1550621 47 100.0 29 ............................................... TATGTACAGTAGTTCCGACACGCTTTCCG 1550697 47 100.0 30 ............................................... AAAAGGCTTTGGCATAATGGATATACCTCA 1550774 47 100.0 29 ............................................... TCACACCAAAGCGGCAACGATATAGACTT 1550850 47 100.0 29 ............................................... ACAATGGAAAATAAAAAATTGAATGAATA 1550926 47 100.0 30 ............................................... ATAAGCGTTTACCACGAGCGGACAAACGAA 1551003 47 100.0 31 ............................................... AAACGCTCTCTACTCATATACGAAGGTTCGT 1551081 47 100.0 30 ............................................... CGTTTGCAGGGCGAAAGCCACGAAGATGTG 1551158 47 100.0 30 ............................................... AGCGGTGGAAAAGATAACGAAGCCTCAACA 1551235 47 100.0 30 ............................................... AGGCTTTGAAAATTTGCGAACAAGCAAAGA 1551312 47 100.0 30 ............................................... GCATACAAAGCAGCTTTAGAGGCAAAGCGT 1551389 47 100.0 29 ............................................... GGATAAGGCAGAGCTTAAACAATGGAATA 1551465 47 100.0 30 ............................................... CAATGCGTCGGAGGGAACAAAGTGGACTAT 1551542 47 100.0 30 ............................................... AAGAATGAGAAACCTTTTTGGAATTTTATA 1551619 47 100.0 30 ............................................... ATTCTGCTCAAATATGGTGTTAATGAGTTC 1551696 47 100.0 30 ............................................... TAAAGGAAAGGTACTATCAAAGTACCTATA 1551773 47 100.0 30 ............................................... TTAGCGGGTAAACAATTGCAGCACGAGCGA 1551850 47 100.0 30 ............................................... GCAATGGGCGACGGTGTAAAGGCTTTAGGT 1551927 47 100.0 30 ............................................... AGAAAGATACGGAGATGTTGTCGAACTCGT 1552004 47 100.0 30 ............................................... GCTTACAAAGATGTTGCCTTTGCCGAGAGT 1552081 47 100.0 30 ............................................... ACGCCAACTTTGAAAGCCAAACAACGATAC 1552158 47 100.0 30 ............................................... GATTTCTCGAAATGTCCTCCTAACGACTTC 1552235 47 100.0 30 ............................................... TGCCGATAGTGTGCTATTATCTTCCTGAAG 1552312 47 100.0 30 ............................................... CTGTCGGGACAGAGGGCGTTAAGTGTTTGT 1552389 47 100.0 30 ............................................... AGACAGATAATAACAATATATAAAAAACAG 1552466 47 100.0 30 ............................................... ACCGAAGAAGCTAAACCTGCAAAAGAGCAG 1552543 47 100.0 29 ............................................... CACAAAATTTGTAGGATTGTAGGACGGTA 1552619 47 100.0 30 ............................................... AGACTTATCATTTATACGAATATCAACAGC 1552696 47 100.0 29 ............................................... GGTGTACATAAAATTCTTACTTAACATAG 1552772 47 100.0 30 ............................................... ACAAAAAACGACCTTAAAGTCGTAGCGTCA 1552849 47 100.0 30 ............................................... AAATACTTATTTCTAACATACTCAGGAATA 1552926 47 100.0 30 ............................................... CCTTTACCAACACTATTTAAAAGTTCTGCA 1553003 47 100.0 30 ............................................... AACGTTGTCGTTGGCACACCGTTCTTGTAA 1553080 47 100.0 30 ............................................... TCATTGAAAAGGCGATAAACATTAAAGTCA 1553157 47 100.0 29 ............................................... ACGTCATAATATTAACGTACATCTGCATA 1553233 47 100.0 29 ............................................... GTACAATACAATGTAATCAGAGATATGGT 1553309 47 100.0 31 ............................................... CAATGATGGGACTAAGCAATATGGGCGACAG 1553387 47 100.0 31 ............................................... TACTCGAGGGAATAAACGCAAAACTGCCAAA 1553465 47 100.0 29 ............................................... AAAAGAAAGACTAACACAAAGCGGAAAAA 1553541 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 59 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGTCTGAATATTCGTTAAAACGACTCCGAAACTGTTAAATTTTAAAGCCCCAACTTCCGAATTACGGGCACTTTTCTGCACTTCAAATTATTTATTTGCAAATAACGCCATTATTTGCGTGCTACCATAAGTACTTCGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTGTGCAATGAAACCATACCTTTTACGTCGCAAAACGAACACTTTTCTTCCTATATAGGCTATATTTTGCGCTTTATCATCATCTTTTCGCTCTGCAAAAGTGCCGTTCTTGCAATCCCAAAGTGCCGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCACCCCCTATTTTCCCGCTCTCTTTTTCTCTATTTTCCCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : CTCAAATGGATTAAAGTGATGAACATCAGTGTTGTTACGAAAGATTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTGGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATGTGTACTTCCATATTTTCTTTACTGCCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCGGGATAAACCATTCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //