Array 1 248771-247235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWY010000003.1 Listeria booriae strain FSL L7-0385 NODE_3_length_376537_cov_69.966910, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 248770 30 100.0 36 .............................. CGAGATATTGTTATGATTCACGGTGTAGATAAAATA 248704 30 100.0 36 .............................. AGAAATAACTACATTTGACGGTTTAGATAAATGAAA 248638 30 100.0 36 .............................. TATTACCCAGCGTGGAGCAAGAGTGATGAGGAATTT 248572 30 100.0 36 .............................. TCCTGAAATCACATATACCAGAAAAAGAATCACTGT 248506 30 100.0 35 .............................. AATCCATTAGAAACACAAGCAAGTACGGAGAATAC 248441 30 100.0 35 .............................. AAAGACAGCGATGGACTACAAGCAAGACAAGATAA 248376 30 100.0 36 .............................. ACAGGAGCCGCAACTCAAAAGAAAACACAAAATGTC 248310 30 100.0 38 .............................. TCGACTTGAAACAATCAGACAACATCCAACCATTCACA 248242 30 100.0 35 .............................. AAGACGAGCTAAATTGGGATATTGCAAATGTATCT 248177 30 100.0 34 .............................. TTATTATAGGCACAATGGTAAAGATTTAAGCCGC 248113 30 100.0 37 .............................. TCCAGTCAATTAATGCTGGAATTACTGGTATTGTGTC 248046 30 100.0 35 .............................. ATTTCTAGTGTTACGGGGGTTGTATCAGGATTAAC 247981 30 100.0 36 .............................. ACTTTCGACAGTAAAAGGAAAGCGGAAGATGTTGCC 247915 30 100.0 35 .............................. TTTGTTCATGTTGTCTGCCTTCGCACGCGCATCCC 247850 30 100.0 36 .............................. AAATTCGTTAGACGAGTTGTAGGAAAAGATGAGGTG 247784 30 100.0 34 .............................. CAACAATCACCACCGTGGGAAATAGTAGGAACGC 247720 30 100.0 36 .............................. GCACCAGCGTTAGTTGTGGTGTCACAGTGGTTCGAT 247654 30 100.0 34 .............................. ACGATTGCCCAGCGTCGGAGCTTATTCCAGCCAA 247590 30 96.7 35 .................G............ GCAACATAATGCGAAACGTGATACGTAAAGACTTC 247525 30 96.7 34 .................G............ ACAAGTAATGATTTGTAGTTGATTTGGTCGATCA 247461 30 100.0 36 .............................. TCGTCATTTGTTTCAAATTCTGTAATCGTTGTTGGT 247395 30 96.7 35 .................G............ GTGACATATGTCGTCGTTGGCATGATTGAATTAAT 247330 30 93.3 36 .............C...G............ AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 247264 30 80.0 0 A......C.C.....C.......CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.5 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACGCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGATATGCAAGGGGTTGATCCTGTTTTTGGTGATTGGCTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTTGGTAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCTAGCGCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAATGAAGTAGCCTCTCGTTGCAACAATTCCTGTGCTGTTGGTGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 357988-358288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWY010000003.1 Listeria booriae strain FSL L7-0385 NODE_3_length_376537_cov_69.966910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 357988 37 100.0 29 ..................................... AAAATCGAATCATAGTCCCCGTAACTCTT 358054 37 94.6 29 ........................A...........A CTTGGATTGAGAGATATTGTGAGGAGGAA 358120 37 100.0 29 ..................................... TTTCAATTCAGCAAATTCTAACAATGTGG 358186 37 100.0 29 ..................................... AGTTCAGTACAAACTACTACTAGGTATAC 358252 37 89.2 0 ...........................T.T...TA.. | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 96.8 29 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCT # Left flank : ATTGTACAGCTATCCCCATATCAAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCATCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATTGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTTTAAATATTGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 50587-49965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWY010000008.1 Listeria booriae strain FSL L7-0385 NODE_8_length_115683_cov_64.101906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 50586 30 100.0 36 .............................. TATTGTGACAAACGAAGGTGTTCGCATTGCGGAAGT 50520 30 100.0 36 .............................. GCTTTAGCTCTGGCACGTTTTCGTTCGATGGTAAAT 50454 30 100.0 36 .............................. AGTGCAGTCGAGATACTAGCTCAAGAAAGCGCAGAC 50388 30 100.0 34 .............................. TCCAATAAAAATGCAGGAAGTAATCCGCCCCAGT 50324 30 100.0 37 .............................. CCTTTTTCAATATTGTTTTCAAGAGTGTCGTACGTTA 50257 30 96.7 36 .............T................ CAGGTTGGAAACAAGTCCCGCATGCTAGTGATCGCT 50191 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 50124 30 96.7 34 .............T................ AACTTCGAAAAGTGGGCCAATACAATTCGATTAA 50060 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 49994 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.4 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAATGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 896268-895182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWY010000001.1 Listeria booriae strain FSL L7-0385 NODE_1_length_1241988_cov_65.486495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 896267 30 100.0 36 .............................. TTGAATCAATTCTGTTCTGTCCAACAATGAGACATG 896201 30 100.0 36 .............................. ACAAAAGCACATATTGAACATATCTTAAAACATACA 896135 30 100.0 36 .............................. GCAATTAAAGGATTGGAGCGTTACGCTGCCGTTGGA 896069 30 100.0 36 .............................. CGATATGATACATGCGTTTAAAGACTACTTGGAGCA 896003 30 100.0 35 .............................. TTTGTTGAAATTGTAACAGGTGTCAAAGAATTTGT 895938 30 100.0 37 .............................. CTTTCTTGCAAGGAGCGAAGAAATGGGGCGAATGGCA 895871 30 100.0 36 .............................. CGCATTCGAAATCTGGAACTGTTTCATAAGTGCCCC 895805 30 100.0 34 .............................. TCGTATTGGGCGTAGAATCATCTACATACGCCTG 895741 30 100.0 37 .............................. CTTGTAAACGCATATTTTGCAACTCTGCAAAAGGTTC 895674 30 100.0 35 .............................. GTTTTTGCCACATTTATGTTAGCAGAATCTACAGC 895609 30 100.0 36 .............................. AAACAGCGGGCGGAGACGTTGCCGCAACAAGCAAAA 895543 30 100.0 36 .............................. TGTGGTATAATTGTCATAATAATATTATGAAAAAAA 895477 30 100.0 38 .............................. AGCTATACGATTTTCTGACTAAGTTCTGCAATCTTTTC 895409 30 100.0 36 .............................. TTGATATACATTTTTCATTTGATTTTTGTTGTTTTC 895343 30 100.0 35 .............................. ATAAGGATGAATGGGCACAATCGACAGTTAGACAT 895278 30 100.0 37 .............................. ATCTATTTCATGTAATCCTTTGCTTTATCTGCCAATT 895211 30 76.7 0 .................A....TCCAG.C. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGTTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : AGATTGCTCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGGTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCACCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //