Array 1 174568-176815 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOR01000003.1 Deinococcus planocerae strain XY-FW106 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174568 29 89.7 32 A..T...C..................... GGCACGCTGGCGGGCACCGGCCAGTACGGGCT 174629 29 100.0 32 ............................. GCCCTCACCCACTGGAGGGCCGGGTTCCCGCC 174690 29 100.0 32 ............................. AACCCCTGGCCCCCGAACGCCCGCGCTCACCG 174751 29 100.0 32 ............................. ATCGTCCGTCCCAGGACCTCGCCCGCCCAGAG 174812 29 100.0 32 ............................. CGCATCACCACGTCCCTCCTGCTCGGGGACGC 174873 29 100.0 33 ............................. CCCGTGCCTCCCCCTGTAGTCCCCCCTCCCGTG 174935 29 100.0 32 ............................. GCCGAACTCAGAGTTGGGGTAGGGCTCAAGAG 174996 29 100.0 32 ............................. AGGGGGCTCACCCTCACGCATCCGTGGCCCTA 175057 29 100.0 32 ............................. AGCCCCTCGTGACCGCGCCCGACGAAGTACAA 175118 29 100.0 32 ............................. TGCGCGTACTGGACGATGCCCTGCATCAGCGC 175179 29 100.0 32 ............................. GTGGGGTGGATTCTCTACCTGCGTGACCGTGC 175240 29 100.0 32 ............................. TGGGAGGGTGACGAGCAGACGGGAGACCAGTT 175301 29 100.0 32 ............................. GCCCTGCGAAACAAGACCGAGCAAGAGGGAGG 175362 29 100.0 32 ............................. CACGACCACCGCCTGCTCGACCGCCTCTGGCC 175423 29 100.0 32 ............................. CTGGTGCGGTCGGAAGGCGGGGACGTGATCGG 175484 29 100.0 32 ............................. GGGATGTTCGCGCAGCCTCACGGGGAGACCGC 175545 29 100.0 32 ............................. CCGGGTCCAACCTCGCGCAGGCCGCGCTCGCG 175606 29 100.0 33 ............................. CCGCGTCAAGCCCGCCCTGCAGGGCGACCTCAC 175668 29 100.0 32 ............................. CTGAGCGGGTGCAGGCTCTCGCGGTGCAGGTC 175729 29 100.0 32 ............................. GCGCGGGCCGGGAGGTGAGCCGTGAGTTCCAA 175790 29 100.0 32 ............................. GTAGGCCACTCGGCCCGAAGCATTTGAATACG 175851 29 100.0 32 ............................. GGGGTGCGAGCTTGCCCCCGAGCCCCAGGCTG 175912 29 100.0 32 ............................. CTCATTTTGGGGAGGGTGGGCGCTTAATTCAT 175973 29 100.0 32 ............................. CGCAGCGCCGCCGCCACGTTCCCGCCCGCCGC 176034 29 100.0 32 ............................. ACACCACGATTAGCACGGATAGCAGCGCCGAT 176095 29 100.0 32 ............................. GATGGGCTTGATCGCCAAGTACCCCTTTGCCC 176156 29 96.6 32 A............................ CTGACGCTGGCGCCGCCCGTCCTGCAAGATCA 176217 29 100.0 32 ............................. GCAGCCGTGACACCTCACGGGAGACGGTAACA 176278 29 100.0 32 ............................. GGAGGGCGTTCAAGCGGGGGCTCCCATCGGGG 176339 29 100.0 32 ............................. CGTCGCCGTCCAGCGCCTCGGCCAACCCACCC 176400 29 100.0 32 ............................. GCACCCACGCCGCCCGCCGCGCCCGCCGCTCA 176461 29 96.6 32 G............................ CACCTGTACGCCGGGGCCGCCCTGAACGCGGG 176522 29 100.0 32 ............................. GGGAGGCGTTCAGGGCAGGTCACAGGGCCGCT 176583 29 89.7 0 .........................CC.T - Deletion [176612] 176604 29 96.6 28 G............................ AGCGCGGCAAAGTCGTCATCCGTGCCCG 176665 29 100.0 32 ............................. CAACTGCTGACCGAGATCGCCAAGCAGGGGGC 176726 29 100.0 32 ............................. CACCTGTTCGTGCTCGCGGGGGCGACTGCGCA 176787 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.2 31 CGGACCATCCCCACACCCGTGGGGAAAAC # Left flank : GTCGGGCCCGCCGTGGACGTTCGAGCCGTTGATCTTGCCTAGTCCCCAGCCGGGAATGTTCATCCACGTGTCGCGCGGAATCGAGAGCAGATTCGCCGTGCCGTCCGGGCGAAACTGCGCGAGCACGATGGTATCGGTCAGGCCACTGTAGTCCTCGGGCGCCGCCGGGTAGGGCCACACCGGACTGGGCGGGTAGTTCGGCGTGACCCCGGCGAGAAGCACCGTCACCGGGCCCTGCGCCTTGCGGGGCAAGGCCCCGTAACGGGCCAGGGCCGGGGCGGCGGGAGAAAACAGGGCGACAAGCCCGGCGAGCAGGACCAGGAGAAGGAGGACGGCACGGCGGCGCACCCGGCGAGTGTAGCGGGCGGGGAGATGAGGGAACAATCAACTTTGGGTTGACGTGGGTTCCTATGGCTGGGGACGAGTTTGCCGCTCAGGTTGAAACGTCCCCAATCTCTTGGGGAAGAGGCCACGCTTGCCTCGGGCACGTCAACGCCTTC # Right flank : CACTCCCAAAACACGCCGTTTCATCCAGCGCGACCAGCCGTAAGCCTCTCGCAGATGGTCCGATACAGCTTACATTGTCATGCGGCTCGGGCATCCTCGCCCAGCACTTCGCCCACCAGCTTAAACGCAGGCGGGCCGAACTTCTCCCCGCTCAGTCTCCCTGCCCGCTTCCCTCCAGCCATCCCGGTAACTCGGCGGGGCGGCCCTGCGCCCACAGGAAGGCGAACTCGCGGGCGTACTCCCGCGCGGCCTCGGAGGCGGTGGTGGCGACGGTGTACTCGTTCAGGCCGCGCGGCGTCCACGACGAGTAGTGCAGGTTCTGGCTGCCTACCGTGAGCATCCGCCCGTCCACGAGCATCGTCTTGGCGTGCAGGCCGCCCCGGAACCAGCGGGCCTGAAGGCGGCCCTCCAGCCCGCGCGCCCGCAGTTTCCGCCGCAGCACGGCGAGGCCCACCCGGTTTTCCAGCCCCAGGAAGCTGTGCTCGTACAGCAGGGCGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGACCATCCCCACACCCGTGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 29528-25537 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOR01000036.1 Deinococcus planocerae strain XY-FW106 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29527 29 100.0 31 ............................. GCGCGTGGGGTCGAACCCGACCTGGTGGCGC 29467 29 100.0 32 ............................. GTGTTGGTGATGGGTGCCCAGACGGGCAAGAC 29406 29 100.0 32 ............................. GTCACCATCCTCGTCCACCGCCTCGTGAGCAG 29345 29 100.0 32 ............................. GTCATGGCCGCTCTCGCCTCGGGGGAGCCGCT 29284 29 100.0 32 ............................. ACGCAGGTCCCCCAGGGTGGGGACGGGGCGAG 29223 29 100.0 32 ............................. ACGCTCGCCGCCGCCCAGGCCCCCTCGACCGG 29162 29 100.0 32 ............................. CGCGCCCCCACCCTGGCAGCCTGAACGTGGCA 29101 29 100.0 32 ............................. CGCTGGGGGGCCTTCAGCCCGTTGTACGGGGC 29040 29 100.0 32 ............................. TCGAAGTTCGAGGTGACGTAGCTGTTCACGCC 28979 29 100.0 32 ............................. GCACCCTCGCTGGGGGTCGTCCCGCTGTACCA 28918 29 100.0 32 ............................. TTGTCGATGACGAGTTCACCGGGGGCGAGCAC 28857 29 100.0 32 ............................. GCGTCGTCGAAGCGGCTCACCCCTCCCTCCGC 28796 29 100.0 32 ............................. CCACCCCCGGAGAGGCGGCGCGCGGCGGTGTC 28735 29 100.0 32 ............................. GAGGCGCGGGCGCCGCTGGTGAGCCCCACGGG 28674 29 100.0 32 ............................. ACTGGCGCGGCAGCACGCAGGCGGCCCGGAAA 28613 29 100.0 32 ............................. ACGGCATGGTGTGTTGCTGGGCCTGCGGGCAG 28552 29 100.0 32 ............................. CGTGCGGAGGAGGCCGCACACGTGGCCCTGAA 28491 29 100.0 32 ............................. GGCACAGGCGTCCGTGACGGCGGCGGCGACCG 28430 29 100.0 32 ............................. GTCAACGGGCTGCTGTACACGCTGCACCACGA 28369 29 100.0 32 ............................. GTCGTCGTGCCGCGCGCCGCATTGGAGAGCGT 28308 29 100.0 31 ............................. ACCCTCGCGGTGATCCAAATACCGGGAATCC 28248 29 100.0 32 ............................. CTCGCCTCCACCATCAAGAAGTCAAGGGGGCT 28187 29 100.0 32 ............................. ACGAGCAGGGCGCAGATGACCGCGACCGCCAC 28126 29 100.0 32 ............................. ATGAGCCAGACCCAGATGGGCCAGGACATCTA 28065 29 100.0 32 ............................. GCGACCCGGCGACGGGGGCGCTCGGCGAGGGG 28004 29 100.0 32 ............................. GCACGCCAGCGCGACAAGAAGAAGATCAAGGA 27943 29 100.0 32 ............................. ATGCGGATGGTGGTGTCGGTGACCTCGACGCG 27882 29 100.0 32 ............................. AGGCGCCTGACCTGATCCCCCTGCTCGGGGCC 27821 29 100.0 32 ............................. GACGAGGGCGCCGAGGCGCTCAAGGCCGAGCT 27760 29 100.0 32 ............................. AACTTCGGCGAGGTGTCGGGCACGAGCGTGCG 27699 29 100.0 32 ............................. AAGGTCTCGACGCCCGCGCCGCCTACCGCGAG 27638 29 100.0 32 ............................. TGGTACCAGCGCCTCTGGTGGGGACTGACGGG 27577 29 100.0 32 ............................. TTGCCGAGGCGGAAAAGCGGGTGTCGCAGGAG 27516 29 100.0 32 ............................. AGTTCGAGGGTGGGGTCCGTGGTGGTCGTCGT 27455 29 100.0 32 ............................. CTCACGGTGGCCATGATGGCGGGCGACCTCTG 27394 29 100.0 32 ............................. TTGCCGAGGCGGAAAAGCGGGTGTCGCAGGAG 27333 29 100.0 32 ............................. TCATTCGCGCAGCCCATCACACAGAGGATGCA 27272 29 100.0 32 ............................. TGGATAGGCTCGGGCCAGCCTTTGTAGCGGGC 27211 29 100.0 32 ............................. CTGGCAACCGTCAACACGCTATGGACGAAGGC 27150 29 100.0 32 ............................. TCGCTATAGACGCGCCGGGCGGTGCCCTCGGG 27089 29 100.0 31 ............................. AGATTCACGCCCTGGCGTCACAGCGCAGGGC 27029 29 100.0 32 ............................. CCGTTGGTCGGGCGCGGTTCTCTTTGAAGGCG 26968 29 100.0 32 ............................. GCGCACCCCCTGATGTTGAGAGCCGGGCGTCA 26907 29 100.0 32 ............................. GCCCCGCTGCGGGGTGAGGAGGATGACGTGAA 26846 29 100.0 32 ............................. CTCCGCGTCACCCACGAGCCATGAGGCGAACT 26785 29 100.0 32 ............................. CCAATTGAAGACACTCTTTGGCGGCGTGGAAG 26724 29 100.0 32 ............................. GGGCCATCAACCACTTAGCACCCGGATATTTC 26663 29 100.0 32 ............................. AGAACGTCATCACCGACCCGGAGAAGGCGCGG 26602 29 100.0 32 ............................. CTCGTGGACGACGAGAAGCACGTCAAAGACGG 26541 29 100.0 32 ............................. TTCTTCGGGAAGCCGAGGTAGTCCACCAGCTC 26480 29 100.0 32 ............................. GGTATAACCGAGAGTCGCAACAACCGCCGCGA 26419 29 100.0 32 ............................. GCGAAGGGCGCGGCCCCCTCAGAGACGCGCGC 26358 29 100.0 32 ............................. TGAGCGGCCTGGGGCCGTCCTCAATTTGTGTC 26297 29 100.0 32 ............................. CTGACCGGGCCCCGCCGTGACCGCCTCAGACA 26236 29 100.0 32 ............................. GCGGTGCCTCGTGACCGCCCACGAGTCCGAGT 26175 29 100.0 32 ............................. CGGCTCTCCCCGGACGCCTGGCGCGTCGGCAC 26114 29 100.0 32 ............................. TCACCTGGCACTCTAAGAACATGGCATTGGAT 26053 29 100.0 32 ............................. TGAGCGGCCTGGGGCCGTCCTCAATTTGTGTC 25992 29 100.0 32 ............................. TCGGGGTCAGCGGCGAGGACGGCCTTGCCCGC 25931 29 100.0 32 ............................. AGGAGCAGGTCCGGCAGTTTCTCGCCTGCCTC 25870 29 100.0 32 ............................. GCTCATGCGTGGTGTAGAGCGTATGCGCCTCA 25809 29 100.0 32 ............................. AAGGCGCGTTCCCGCAGGGGGGCGAACACGCC 25748 29 100.0 32 ............................. AGCCTGAGCCGGACCCCGACAAGACGCCCGAG 25687 29 100.0 32 ............................. GTCCCCAGGTCGGGGGCGGGCTCGGGGGTAAC 25626 29 100.0 32 ............................. GGTAGTCCTGGCCGAGCCCAGACGGTCAGGGT 25565 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 66 29 100.0 32 GTCTTCCCCACTCGCGTGGGGGTGAACCG # Left flank : CTCCACCACCGAGCGCGACGTCACCACGTTCGGCAGTCTAGCGAATCATGAAAAAGCGCCCCACCTGGGGGCGCCCACGTGACCGCGCGGCCTACCCGCCGAATCCACCCTTGCTGTTGTCGCCGTCGGGCATCACCGTGCCGGACGTCACCTCCGCCCTCAGATCATTCGCCCCCGCCCAAGACAGGCCCAACCCCAACGCCAGCACCAAGCCCAACACCCGAACCGTTGCTTTCATGACCGCTCCAGGAACGGCGGTTTGAATTGGAGCGCAATGCGCCGCAACCACCGTTCGGGCGCAAGAGTCGGTCTGACCCGCGAAAGGGCTGGTCGCCGCGGTGCGCGACAGGTTTTGACGCAGAATGGCTTGCGCCTAGGCGCGCGAGGCCGGACACTGAGAACGGCCTACCCGGCGGGTCGCATGAAAATGTGAGCTGAGCACTTCAGCCGCTTGATACTTGGGAAGAGGTGAACGGCGTTTCTTCCCGTGTTTCTGAAGT # Right flank : CCAAGGGTGACGTGTTTGAGGGTGAGCCCCTGGTCTTGGGGTGATGCCAGTAGCGGCGCAAGAACAAACGCTAAGCCCTCGCCCATGCGGCTGATGGCCATCCATCTTTTTGTTCCACCACTGGCTCAAGCGGGACCGGGCCACGCTTCTGCGCATGTTTGGTCCCGCTCGTCTTCTTGCCGTCAGGTCGCCGGGAGGGGCCGCGGCGCCGAAGCAGCGGCCCGCTCGAAGCGCAGCCGGTTGAGCAGCAGGGCATTCACGGTCACGATGACGGTGCTCGCACTCATCAGCAAGGCGGCCCATTCCGGGCGCAGCAGGACGCCATAAGCCGGATACAGCACGCCCGCCGCAAAGGGGATGGCGAGGAGGTTATAGATCGCCGCCCAAAAGAGATTCTGCGTGATCTTGCCCTGCACCTGGCGGGCGAGGGCGATGCCAGTCGCCACACTCGCGGGGTCGCTCTTCACCAGCACCACGTCGGCGGTCTCCACGGCCACGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACTCGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41733-44018 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOR01000036.1 Deinococcus planocerae strain XY-FW106 contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41733 29 100.0 32 ............................. GCCACGAACGAGTACGACTTCGAGGCCCTCTA 41794 29 100.0 32 ............................. TGGTCCACGTCGAACACCGCGAGGGCGAGCTG 41855 29 100.0 32 ............................. CCGGGTGAGCAGTGACCCTAGACGACGCCATC 41916 29 100.0 32 ............................. CGGGTCTCCACGCACGCGGCCTCCGGGGTGAG 41977 29 100.0 32 ............................. GAGGCCCGCCAGTGACCCCCGACATGCCGATA 42038 29 100.0 32 ............................. GATTTCACGCCGCCCGCGGTCATTGACGTGCC 42099 29 100.0 32 ............................. CGGAGAGGGGGGCGCGATGCGGCCTCTGACTC 42160 29 100.0 32 ............................. CCGCCGCGGTCACGCTCCACGTCCACCCGGGG 42221 29 100.0 32 ............................. ATCCGCGCCCTTCCCATCACCTTCATGGACGC 42282 29 100.0 32 ............................. CAGATTCTCGCCGAGCGCGACGGGGGGCTGCG 42343 29 100.0 32 ............................. GCGGACGGGAAGCACATAGACCTGATCAACTT 42404 29 100.0 32 ............................. GGCAAGAAGGAGTAAGCATGGACGGCAATCAA 42465 29 100.0 32 ............................. AGGTCGGAGAGTTTGTTGCGCTCGTCCCCATT 42526 29 100.0 32 ............................. GGAAACCGCCCCCTACGTGTGGCGTAGGCAGG 42587 29 100.0 32 ............................. ATCACCGCCGAGGCCAAGCTGTCCGAGGCCAA 42648 29 100.0 32 ............................. ACCTTGAGGCTGTTGAGTTGGGTGGAAACGAT 42709 29 100.0 32 ............................. GTGGTGGACGGGGGGGAGTGGGGGGAGGAGGA 42770 29 100.0 32 ............................. TGGGTGCCGTTGTATTCCTGCCAGGAGTTCGC 42831 29 100.0 32 ............................. GTCCTCGGCGCGGCCGTGCTCACGCGGTCATC 42892 29 100.0 32 ............................. GGCAAGAAGAAGACCGCCCCCCCGGGCGTGCC 42953 29 100.0 32 ............................. CACATGCTGGGCCTGGCCGGGAACACCGAGGC 43014 29 100.0 32 ............................. GTGTAGCGGCCCCTGGGCAGCAGGAGGGTCTG 43075 29 96.6 32 ............................C CCGCCTCTCTCAGAAGATCGGAGCCGCGTTGG 43136 29 100.0 32 ............................. AAGGCGGTGCACGCGCATTTTAACGGGGTCCT 43197 29 100.0 32 ............................. CCGCTCACCAGGTTCAGGGCGACGGGGTCCCC 43258 29 100.0 32 ............................. ACGGCGGCAGGCACGTTCGGAGCCGATGAGCA 43319 29 100.0 32 ............................. CCCTCCTGAGTGCCGCCCTGGAGCCCCGTGAC 43380 29 100.0 32 ............................. TAAGCCTCCCAAGTTAACCAAGTCTCTATTGC 43441 29 100.0 32 ............................. AGCCTCCGCTCCCGGCGCCTCCAGATTGACCA 43502 29 100.0 32 ............................. TCGAGGAAGGCACGAAGCTCGCTCATGGCCGT 43563 29 100.0 32 ............................. GTGAGCGACCTCAAGGCCTCGCTCGGCCAGGT 43624 29 100.0 32 ............................. CACGTCGGCGGCGATGCGGACGGGGACAACGT 43685 29 100.0 32 ............................. GCATACGGCGTGACGGGCAGGAACTCAGATAT 43746 29 100.0 32 ............................. CGCTCGCTGACCGCCTCAAGGCTCTCATCAAG 43807 29 100.0 32 ............................. GTCACCTACCGCGTGGACGGTGAGCCGGGGTA 43868 29 100.0 32 ............................. CCGGTGAACCTGCGGCCCGTCACCGGCCATAT 43929 29 96.6 32 .................A........... GTATTCGGCACCGAGGAGCGCTTCCACGTCTC 43990 29 89.7 0 ...........G..A.............C | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.5 32 GTGCTCCCCACTCGCGTGGGGGTGAACCG # Left flank : CCTTGATGGAGGCGGACCCGGAGGGCGAGGACCCCTTTGAGGCGGACGAGGCCCGGCCTGGCGACCTGTGGGACCCGGAAGGCGACGTGGAAGGGGGGGTAGCCTATGGTGGTGATCGTGTTGGAGAGCACGCCGCCGAGCCTGAAGGGTGAACTCTCGCGCTGGATGGTCGAGGTCACGACGGGGGTCTACGCGGGACGGGTTAATGCCTTGGTACGCGACCTGCTGTGGGAGAAATGCGTGCAGCACGCGCGGCGTGGCCGCTGTTACCAGGTGTACCGCACGAACGCGGAGCAGGGGTTCGCGATTCGCATGCACGGAGACGCGTTGCGAAGTGTGGTGGACTTCGATGGCTTAGAATTTGTGGCGGCCAAGAACGCACAGTGGGCCGAGAGTCAACCGGGCAACACGCCAGAGAAGCATGACAATGTGACTTAGACTCACCCGCCGCTCGATACTTCTTGGGGGTTGAGCGGCGGTTTTCGTCGTGTTTCTGAAGT # Right flank : CGCTTTGTAGGTAGCCGTGCTTCTGTAACTCCTCATGGGCGAGGGCCAGTCGGCTCTTGAGCTTGCTCGCGGTCAGCGTCTCGTAGTCAGGGACTCTCCCCAGGAGAGGAGTGGCAGGGTGATTGACTTCTGCACCTGCCCGTCCATATTCCGCAGACTGTCGAGCACCCGGTACAGCCCCCGGCCCAGGACGTTCTTGATGCTCTGGTACAGCTCCAGGTTGAAGGTCCGGGTATAGCCATTGCGGATGCTCCGCACGATGGGGTCGGGAAGCTGGATGCGCAGCAGGGTGTCGGCGCGCAGGTCCCGGAATTCCTCGGGCGCCTCGTTGCGGGTAAGAGTCGTAGCCGCCGCGAGGAAGTGGAAACTCTGCGACAGCCGGGTCCTGGACCGACCGTCATACCAGCTCTACAAAATCTTGTAGTCGGCATTGCGCATGCGCTCCAGGGACTCGTGGACGGCCTGCACGGCCGGTGCTGAGACAGTCATTCCCGCCATCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACTCGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.40,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52635-51569 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOR01000012.1 Deinococcus planocerae strain XY-FW106 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52634 29 96.6 32 ............................T TCCTCGCGGGGGATGAGTGCGGCCCTTCTCGC 52573 29 100.0 32 ............................. ACGCCGGGCACGGATGACGACTTTGCCGCGCT 52512 29 100.0 32 ............................. CGCGTCCTGTTCACCACGATCTACGCCATGCG 52451 29 100.0 32 ............................. CAATGATGTTCTGAACGGGATTCGCAGGCAGG 52390 29 100.0 32 ............................. ATCACGCTGGGCGCGCACGCGATGGGCACGAC 52329 29 96.6 32 ............................T TACAGGCGGATCGTCTGCAATTGTCAGATCAA 52268 29 96.6 33 ............................A GGGGGGTATGAATCACGTCCCCCGTGACGGTGA 52206 29 96.6 32 ............................T CTGGGCGCACAACGCAAATGCCGTGTTGACAG 52145 29 100.0 32 ............................. CCACACGATGCCGATGGTTGTGGACATGCTGA 52084 29 100.0 31 ............................. CTCATCAAATGGCAACCGCCCGTTGCCGAGC 52024 29 100.0 32 ............................. CCGATATGCCCGATTTCCTTGCGCCCGGCCAC 51963 29 100.0 32 ............................. GTGTGCCACCTGCGGGCGGCCTTCACCCTCGA 51902 29 100.0 32 ............................. GCCTCGTGCATCTCGCCCGCCGTGACGCTTTT 51841 29 100.0 32 ............................. CTCGTGCGCATCTGGGGCAACGGGGCCAGCTT 51780 29 100.0 32 ............................. TTCGTGGACCAGAACCGCAAGGCGGCGGTGCG 51719 29 100.0 32 ............................. GGGCCGTAGTCGGGGTGGAGGCTGGTGAGCCA 51658 29 100.0 32 ............................. TCTACGACCTGGCCGTCTTCCAGTTGCACGCG 51597 29 86.2 0 .............A.A........AC... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTTTTCCCCACGGGTGTGGGGATGGTCCG # Left flank : ACCACGCCGAGGACGCGCCTCAACTGGGCACCCGCCTGGGCGAGCGCAGCGTGCGGATCGTCCTCCTGCACCGCCGTGACGGCTCGGTCTGGCTCGACGCCGATGGACGCGAGAAACCGTGCCTCCACAATCTCCGCAAGGACGACTGGGACACCGCCCGGCGCATCTACGAGCGCAGCCTCCAGGTCACGCGCCCGGACATCGTGTCCGGCATCGAGGCTCATGTGAGTACGAACGGCCTGCGGCTGGGCGGCGAGCATCAGGGCTGGGCCGCCCACCCCCTGCTGCGCGGCTGCCTGCCCCTCGTCCTGACCGGCGGCGAGGCCACGCTGGGCCGCACCCGCGTCCGCCTCGACGACGAACTGGGGGTGGTCTACGAGCGCGTCGGTTAGGCTGGGCCTGGGCGGTTGCCCGCGCCGCATGACAATGTGAGGTGAGTCGGATCACCCGGGAGAGGCTTCGGGTAGGGAGTGGGTGGTTTTAGGACGGTGGGGCGAAGT # Right flank : TACTCTGGCCTTCAATATCCGACGATTTCAACCTTCTCCACACCTGTGACGAAACGAGACCTCTTCCATGCTCAAAACAACTCAAGCACCTGACCCCACACGACCCTGCTCATCAGCCTGGAATCAGCGCGGGGGGCCTACAGTACCTTAACGGAAGAGGAGCAGTTCCCAGACCTTTGGCGGACGCTCTTTCCCGACCCCAAGGCTAGGATGTGAAGCGCCCATGACTCCCGCCGTACCTCTCTGTCTCGCCCTGCCCGAACGTCTCCGGACCCCTCCTCTGCCCAGGGTCGGGCGCAGCGTGCGGTCCCGCCTCCCGCTGCGGGGGTGGACGCGATGAGGCGGCGGTGGCCGTGGGCGGTCTTGCTTCTCGTGGCGCTCGGGGGTGCGGGAGGCTACCTGTACAGCGAGAAGCAGGAGACCGGCGAGATCGCCCGCGCGGTGTGGCAGGAGCTGCCCGGCAAGGGCGATCCCGAGGAGGCGCAGGCCGAGCCGCTGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGGGTGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 65148-66558 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOR01000012.1 Deinococcus planocerae strain XY-FW106 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================= ================== 65148 29 100.0 32 ............................. CAGTACACACACTCTTCCGTAATCACCGACAA 65209 29 100.0 32 ............................. GTAATCTGGATGTTGAGCGCGGCGGCGTGGTC 65270 29 100.0 32 ............................. ATCACCGGGGCGGGCATCGCTCAACGCAACCT 65331 29 100.0 32 ............................. GGGAGGTGGGGGCGCGGTATACCGTCGCGTTG 65392 29 100.0 32 ............................. CGGTCTAACGTTGCGGGGAGTGCCCCGCCCAA 65453 29 100.0 32 ............................. GGTGCTGCTGCTCCCTCCGCCGGGCGGGATGC 65514 29 100.0 32 ............................. GCGTCCGAAAATCAGACAGGTGGAGCTACCAC 65575 29 100.0 31 ............................. CTCAACCTGACCTACGACCTCACCCGCTTTC 65635 29 100.0 32 ............................. TATCCTTGGCAACTTGTGTGTCACAGGGTCGA 65696 29 100.0 32 ............................. GCCTGCCTTCCGGGTCACGGCGGTCACCGACC 65757 29 100.0 32 ............................. CTCCGCACTGCCCCTGCGGGCAACGCCAGCTA 65818 29 100.0 32 ............................. GCCTACGTGGACGCGTCCGTGCAGGGGCTGAA 65879 29 100.0 32 ............................. GTGTATGCCGCGCTGGACAACCCGCCCGCCGA 65940 29 100.0 32 ............................. AGCTCATTCCGTTCCCCACCCGTGCCGCCTCC 66001 29 100.0 32 ............................. CCGCCCCGCTACCGCTTCCGGGCCTTCGCCGG 66062 29 96.6 32 ............................C AGATGTTTTCTCCCGACTTGCCCGACACGCCC 66123 29 100.0 34 ............................. GTTTGAAGTCGGTCACGGGGTCTCCTGGGGAAGT 66186 29 100.0 32 ............................. ACCGACGCGGGCCTCGTCACCCGCGGGGGTGC 66247 29 100.0 32 ............................. ACCACGCTGACCACCATCCTCACCCTGATGGC 66308 29 86.2 193 ..C........CC.......A........ GCGTGCTCACGGACGCGGTGACTCTCCCATACGTGCTCCCCGTCCAGATGGGACGCCTGGCGTCAGTTCGTCAACTTTTCGCAAAGAGGCCGCGCGGTTTCACCCGGTACGCTGCCTCCACCGGGCATGCTTTTCTCTCCCTCACCCCGTGGGGATGGCCCGAGGAGTTGTTCAAAATGAGATTGTGCCTGAC 66530 29 75.9 0 C...........CT........C.T.TT. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================= ================== 21 29 98.0 40 GTTTTCCCCACGGGTGTGGGGATGGTCCG # Left flank : ACCTCGTTCACCTCCTCGGCGGCGACGACCCGGACCCCGAGCCGAGCGCACCGGGCGACCTGTGGGACCCCTCGGGCAACGCGGTGGGAGGCCGCAACTATGCTGGTGATGACGCTGGAAGCCGTTCCTGAGAGCCTGCGCGGCGAGCTTGCCCGCTGGCTGATCGAGGTGCAGCCGGGCGTGTACGTCGGCAACGCCTCGGCCCTCGTCCGCGACCTGCTGTGGGACAAGGCCGTGCAGCACACGCGCCGGGGCCGCTGCACCCAGGTCTACCGGGCGCAGAACGAGCAGGGCTTCGTGATCCGCACCCACGGCGACGGCGCCCGCCGCGTCGTTAGCCTCGACGGCTATCAATTGGTCGCCGTTCGCAACGCCCGCCACGCGGAACTCAGCCGGGAGTATGCCCCTCCCGAGGACGATGACAAATTGTGAGGTAAGTCGGGGGTTGGAGAAGAGACCTCGATACGGGTGATGGTCGGGGAGGCGTGTGTTTTGAGAGT # Right flank : GCGGGAGGCCTGCTGTGTCCTGCCCGGCCCTTACGGCTGGTGGTCGGGGGGCAGGGCCGCCGTGGCGAACCAGAAGGCGCCCAAGGAGCGGATGACCTCGACGAATTCCTCCAGGGTGACGGGCTTGGGGATGTAGGCGTTGGCGTGCAGGTTGTAGCTGCGCCAGATGTCCTGCTCGGCACGCGAGGTGGTGAGGACGATAATCGGGATATTGCGCAGGTCCTGGTCCACCTTGAGCACGTCGAGGACCTCCAGGCCGCCCATGCGGGGCATGTTCAGGTCGAGGAGGATCACGTCGGGGCGCGGGGCTCCCGAGTGCTCGCCCTCGCGGCGCAGGAAGGCCAGGGCCTCGACCCCATCCCGGGCGAGGTGCAGCGCGTGGGGAAAGTCGGCCTCGCTGAAGGCCTCCTCGGTCAGCAGGATGTCGGCGGCGTTGTCCTCGACGAGGAGAATGTCGATGGCCTTCATGGCCGCGCCGCCTCGGCCCGGGTCGGGAAACG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.75, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGGGTGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //