Array 1 152102-152598 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLM01000001.1 Porphyromonas gingivalis strain WW5019 NODE_1_length_268734_cov_39.5077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 152102 36 100.0 30 .................................... AAAAGGTAGAAAAAGAATATCTGTTTGAAC 152168 36 100.0 30 .................................... TCTAGGGACTCTGTGTGCTATTATTTCTCC 152234 36 100.0 30 .................................... CACAATGATATTCGAACTCTCAACGAACAA 152300 36 100.0 30 .................................... TAAATAAAAGAAATATAGATTATAACTACT 152366 36 100.0 29 .................................... ACATTGATAATCTTGTTATTGACGTGTAT 152431 36 100.0 30 .................................... AAGAGATTATATCAAATAACTAAGTCATCT 152497 36 100.0 30 .................................... AGCGTAGTAGGCATCTTCCCGCTCCGCTCC 152563 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGATCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTTGATGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCCCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCAGTACAAATTCACAGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGCTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATACTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGGCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 33950-34318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLM01000002.1 Porphyromonas gingivalis strain WW5019 NODE_2_length_239214_cov_36.3239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 33950 36 100.0 30 .................................... TAATAATCATCGCTGTTCTACTTGCATATA 34016 36 100.0 30 .................................... TCAGACAAGTACAACAAACTACCAATATGT 34082 36 100.0 31 .................................... CGTAGCCCCTTGGAAACGTTTCGAAATACAG 34149 36 100.0 30 .................................... ATCTTCCGTGTAATAGGTCCGGATGGTTAT 34215 36 100.0 30 .................................... CAACGACCTGTGGGATAGCTTTGGATCTCC 34281 36 77.8 0 .......................C.CC....GATCT | A,G [34302,34310] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 96.3 30 GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Left flank : CTCCCTCCACAATAGAAACATCGGCTTCACTGCCGTAGCGATCATAGAGTCGGGCGATATGCTCCCGACTCATCATGAAAGCATCCAGATTCACCGTTTCCGTTCCGCATGCAAGGCGGTGATACTTAGGATCGATATAGTCGGGACCGCATTTGAAAGGCTGCACTTTGAGACCGTGCCTTCGAAGCAATCGTAGCAATCCGAGCGTGAAAGAAGTCTTTCCACCACCCGATGAAGCAGCACTGATAAGGAGATGAGAGCGTTTGATAGGAACAGACAATTATATGAGTTAAGGAAATCGGGATTTACAGACAAAAGCCAAGGAAGAGAACGAAAGGCCTCCCGATCGAATGGATAGCTGCACACAAACACTGTCGGCTACAACCCTCTCCTCCGAACACGATCCCCCTATCCATTTTCCATCACTTTAGCGATCGCTAATTTAGGAATACTTCCCCATCAACAGCACAACTTCCCCTCTTTCTCCTTTCGGAATAATA # Right flank : TAAGCGAACATACCATAAAAATAACAAGTAGCTGTAAATCATACTCTTTTGTGATTCTCCGGCTGCATAATGATCGGGAAGAAGGGGCGGCTTCCAAGTCATTGGGCTTCAGATGTAGATAAAAAGCCATCTGAAAGCAATATAAGTGTCTGAAAAACACTGTGTGGAAAATAAAACACACTAATAACCAATGTGTTGTGCCATTCCTTTATATCGAACTCACGTTAACTAAGGGTATTCCCAACAATGCGATAACCGAGCAAAAGACGAAATGAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAATTGCTCATGACTATCTAAACCCTCGTAAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAAAGAGGAATTTCATTCCATTTCTGTCTTTGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACGACAAAAACGGCAAGGAAATATACGAGGGGGTTGTCTCCACCCTTCTAACTAAGGGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 34958-34525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLM01000002.1 Porphyromonas gingivalis strain WW5019 NODE_2_length_239214_cov_36.3239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34957 36 100.0 29 .................................... AAGATCCAATTCGGATATAAAATGATCCC 34892 36 100.0 30 .................................... ATCAAAGGCTTTATCTGTGATTAGGGGTTT 34826 36 100.0 30 .................................... CCCCTCGTATATTTCCTTGCCGTTTTTGTC 34760 36 100.0 30 .................................... AAAGACAGAAATGGAATGAAATTCCTCTTT 34694 36 100.0 30 .................................... TTACGAGGGTTTAGATAGTCATGAGCAATT 34628 36 100.0 30 .................................... TCATTTCGTCTTTTGCTCGGTTATCGCATT 34562 35 83.3 0 ....................-.C....T..T.T..A | C,A,T [34532,34536,34538] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.6 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATACCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : GGAATGGCACAACACATTGGTTATTAGTGTGTTTTATTTTCCACACAGTGTTTTTCAGACACTTATATTGCTTTCAGATGGCTTTTTATCTACATCTGAAGCCCAATGACTTGGAAGCCGCCCCTTCTTCCCGATCATTATGCAGCCGGAGAATCACAAAAGAGTATGATTTACAGCTACTTGTTATTTTTATGGTATGTTCGCTTAGATCGAACTGGCGTTTAGTTAGAAGGGTGGAGACAACGGAGATCCAAAGCTATCCCACAGGTCGTTGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACATAACCATCCGGACCTATTACACGGAAGATGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACCTGTATTTCGAAACGTTTCCAAGGGGCTACGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACACATATTGGTAGTTTGTTGTACTTGTCTGAGTTGGGAATACCCTTAGTTAGAAGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 9371-8154 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLM01000044.1 Porphyromonas gingivalis strain WW5019 NODE_44_length_9584_cov_44.6892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9370 30 100.0 38 .............................. TCGCCTGACCGACATCGACCGAACGCAAAAGATGACAT 9302 30 100.0 37 .............................. ACGCTGTCTCTCGCTGCTAATGCAGACCAGCAAACAT 9235 30 100.0 35 .............................. GCCGTCTTCAAAACAAGTTTATAGAGCTGACCGAC 9170 30 100.0 37 .............................. CCCCGACGCCCCGGGCATATTCGACCCCAATAACCCG 9103 30 100.0 36 .............................. CTATTTTTTTCGTACGTTTTTCTCGTAAGTTGTTGT 9037 30 100.0 35 .............................. CTTGCCCAAATAGCGGCCCTTCAGGGGGCAGTAGA 8972 30 100.0 36 .............................. GGCTTTCTTCCACCCACTTCCACGAATAGCCTGCTT 8906 30 100.0 36 .............................. GTGTGATACATAACCCCCCTCTAACCTTTATGCCCT 8840 30 100.0 36 .............................. CCCCGTGGTAACTCATACCACCGACTATTCCACCGT 8774 30 100.0 36 .............................. GAGATATCGGCTGGCGCACGGACATGCGCGCCTCTG 8708 30 100.0 36 .............................. GCATCCGCCTCGTAGGCGGAACGGCCCTGTCCGTAG 8642 30 100.0 34 .............................. GAGTGGTGTATGTCTGCCCTGTTCGGTACCATGC 8578 30 100.0 36 .............................. ACATCCGACTTCAATGGGCAGTTTACACTTTTGCTA 8512 30 100.0 36 .............................. CATGTGTTATGTCCAAAATAATTTTCAGCAGACTAT 8446 30 100.0 36 .............................. GGTTAAGCTCGTCCATCCGCTTGTTGTATTCTTTTT 8380 30 100.0 36 .............................. TGTTGGGTCTGCTGCTCTGCCAGCTTGTGCCCTATC 8314 30 100.0 34 .............................. GGGCGAAGTCCATAAAGTCTCCTATAAGGAGTGA 8250 30 100.0 37 .............................. ACAACTGCACCCCAGGGGATTCCTACTGCAGATATTC 8183 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 ATTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GTAGCGTTTTGTTTGTTCGTATCTTATTGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //