Array 1 455-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJY010000863.1 Corallococcus coralloides strain CA044C NODE_865_length_455_cov_1.10366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 454 29 100.0 32 ............................. CAACTGGAGACGGAGCACTCGGCGGTGGTCAG 393 29 100.0 32 ............................. CTTGCGCACCACCTGGACGAAGAGGGCCTCAC 332 29 100.0 32 ............................. CGGGCGGAGAACCCAGGATCGCGCTTTGACCG 271 29 100.0 32 ............................. CGAAGCCCGCCCCACAGGAGAATCCCCGCATC 210 29 100.0 32 ............................. TGAATGCCGTGCGCGGTCATGGTCTTGTCGGC 149 29 100.0 32 ............................. TGGCACCAGTGGGCGAAGCCGGGCGCCGTCAT 88 29 100.0 32 ............................. AGGCGCCACAGCCGCAGGCTTGTAAGGACGCA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GGTTCCCCCGCATGCGCGGGGATAGGCCC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCATGCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3135-2992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJY010000123.1 Corallococcus coralloides strain CA044C NODE_123_length_26392_cov_21.0356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 3134 26 100.0 31 .......................... CGCGGAGGCCGGACAGGCCCCGGGGGACACC 3077 26 100.0 34 .......................... TGGGAGGGCCGCGTCGGCGGCGTCGGGAGAGGCT 3017 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================== ================== 3 26 100.0 33 GAACCTGTCGGACAGTCGGACAGGTT # Left flank : GGAGCCAGGCGCTGGAATCCCTCATCCAGCCCGGGGCCCGGCTGACGGACGTGTCCCTCCTCCCCGCCGAGGACCGCGCCTGGCTGCTGCGCACCGGCACCGGCGACGTCGTGGACTTCGAGCGCGACACCACCGTGCACGCGCGATTCGAACGACAGGCCGCCGCCACGCCGGACGCGGACGCCCTGGTGTTCGAGGAAACAAAGCTGTCCTACCGGCAGCTCAACGCGCGAGCCAACCGGCTTGCCTGGCACCTGCGGTCGCTGGGTGTGGGCCCTGAAGTCACGGTGGGCCTGTGCCTGGATCGGTCGGTGGAGGCCATCGTCGCGCTGCTCGCGGTGCTCAAGGCCGGAGGCGCCTTCGTGCCGCTGGACCCCAAGGCTCCGGCCGCGCGCAAGTCGTTCGTGCTCAAAGACAGTGGCGCGTCCGTCCTGGTGACGACGCAGGCTCTGCAAGAAGCGTGGCACCCGGAGGTGCCCCACCTGGTACGGCTGGACGCA # Right flank : TTCGGAGAACCCGCCTCCGGTGGCGGGTCCCGAGAACCTCGCCTACGTCATCTACACGTCGGGCTCCACGGGCGCGCCGAAGGGCGTGATGGTTCAACACCGCTCGGTGATCCACCTGCACCTGGCGATGACGCGGAGCATCTACGAGGAGTTGCCGCCTGCTCAGCGCATCACCGTGAACGCGCCGCTGTACTTCGACGCCGCCATCGAACAGGTGATCAAGCTGCTGGACGGCCACTGCCTGGTCATCGTCCCGGAGGACGTGCGGCTGGATCCGGAGGCCATGCTCGATTGGCTGGAGCGTCAGCGCATCCACCTGCTGGACGGCACGCCGTCGCAGATCAAGCTCCTGCTGTCCGCGGGAATGCTGGAGCGCGCCCATGGCCCCGTCCGGTTCTCCATTGGCGGCGAGGCGATGGACGAGGTGACGTGGCGGCAGCTCGCCGCGGCGAAGCACGCACGCGCCTACAACGGCTACGGCCCCACGGAGGTCACCGTGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACCTGTCGGACAGTCGGACAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 5321-5625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJY010000190.1 Corallococcus coralloides strain CA044C NODE_190_length_17632_cov_22.3064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================= ================== 5321 26 100.0 45 .......................... CGCTGCGGCCCGGCCGGAACGGCGGCCCCAAGGCACAGGGTGCCC 5392 26 88.5 45 ...T....C...........C..... GCCGGCGGTCCGGATGGAGCGGTCGCCCGGAAGCGCGGAGGTCCA 5463 26 100.0 42 .......................... CCACGGCTCGGGTGGCGCGACCGTCCCGAAGCGTGCGATCTG 5531 26 96.2 43 ...T...................... CCGAGACTTGGATGGAGCGGTGCCCCCCGAGTGCAGTGGCCCC 5600 26 96.2 0 .......................G.. | ========== ====== ====== ====== ========================== ============================================= ================== 5 26 96.2 44 AACCTGTCGGACAGTCGGACAGGTTT # Left flank : CCGCCCCGGGGCGCGGCGAAGACATCCATGGTGGAGGTGTAGACCACGCGGCGCACCTGCGCGGCGTGCGCGGCGGACAGGACGTTCACGCTGCCCTGGCGGTTCACGCGGTCGAAGATGGAGTCGTCCCGATGCCACTGCTCCGGCATGCCCGCGGCGTGGAAGACGAGCTCCACGTCGTGCATGGCGGCGGGCAGGGTGCCCGGGGACGTGACGTCTCCCTGGATGAGCCGCACGGAGGACGGGAGCAGCTTCGAGGCGCGGGCCAGGTCCCGCACGAGCGCGCGGACGGAGGCGCCCTGCTTCACGAGCCGCTGCGCGATGGCGTTGCCAATGAGGCCGGTGGCTCCGGTGACGAGGACGTTCATGGGACCGGCAATCTAAGCCCCCGGGCCTCCAAGCTGTACACCGCCGGTCCGACACGGCTCCCACCGCTCTGCCTGTCGAACAGGTCCGCGCGGCTCGAATGGGGTGGCCGCTCCCCGGCCGCGGTCCTCCAA # Right flank : TCGCTGAGGCCTGAATGCGGCGAGCGCCAGGGCCCGGGAGCTTGAAGCGGCGGGCGTGGAGCTGGTGCGTGGGGGCATGGGTGACCGGAGTCGCGGACATCCCGGCGTTGCGGCGGCTGGCACCGGGCCTGCTCACGTTCGACGCATGGCTGGAGCGCCGCGGCGCTCCGGGAGCGCTTCGCGGCCGCGTGACCTGGGAGTCCACCGCGCACCGCCCGTCCCCTGTTGTCGCCGTGCGTGCTAAGTCACGCACGGTTCAAGCTCGGGGGAGTTCGCCATGACGGGAGCCATCAGCCTGGAAGCGCTGGCGGAGTACATCCAGGATGCGTTCAGGGACGTGCACGTGGACACCAGCACGCCGGACCTCTTCTTCTTCGCGGGAGACGAGCGGAAGTTCCCCTTCGCGACCATCGTCACGCGGGACACCGAACTCGACCACCACTCGGAGCTGGACCGCGATGGCGTGTTCCGGCTGAACCTGGGCTTGAGCAAGGAGAGCT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACCTGTCGGACAGTCGGACAGGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 13-407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJY010001003.1 Corallococcus coralloides strain CA044C NODE_1005_length_428_cov_0.877076, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 ............................. TGGCGCTGGCAGAGGCCCAGCGGCTCGCGACC 74 29 100.0 32 ............................. CAGCTCGCCACCGTGGACATCAAGCTGCCGTC 135 29 100.0 32 ............................. CGGCGGCATCACGCTTCCAACCGGCACGCGGG 196 29 100.0 32 ............................. CCCGAGCGCTCCATGGCCGCGTTCAGTGTGCG 257 29 100.0 32 ............................. CTGCTGCCCGGCACCACTGCGGAATTCGTGAA 318 29 100.0 32 ............................. GGCTCCACATCCTCTTCGGGAAAAAGCACGTC 379 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GGTTCCCCCGCATGCGCGGGGATAGGCCC # Left flank : CATCGAAGACCAG # Right flank : CTGTTCGGCGGGGGCGCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCATGCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 17072-16907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJY010000054.1 Corallococcus coralloides strain CA044C NODE_54_length_42981_cov_23.6266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 17071 25 100.0 44 ......................... CGGAGCGCCACGGCAGGGGGCCGCAGCTCCGCCCGAGCAGCACG 17002 25 100.0 46 ......................... GGAAGGACCGTGGCTGGGAGGGGCCCTGTTCCACCTGGACATCGGA 16931 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 3 25 100.0 46 AACCTGTCCGACAGTCGGACAGGTT # Left flank : GCGGACACAGCGCTTCCAGGCGGCGGTGGCGGGCGCGGGCATCGCGAACTGGCAGAGCTACTACGGCACGAACCACATCGACTCATGGATGCTGCCGTACTTCGGAGCGTCGGTGTACGACGAGCCGGAGGTGTACACGCGCTCCTCGCCCATCAACGGCGTGAAGCAGGTGAAGGCGCCCACGCTGGTGCTGCACGGTGAAAGGGACCTGGAGGTGCCCGCGTCGCAGGGCTACGAGTTCCACAAGGCGCTGAAGACGCTGGGCGTGAAGACCCAGTTGGTCATCTACGCGGACGAGGGCCACAGCCTGCGCAAGCCCGAGCACCAGAAGGACCGGCTGCTCCGGACACTGGACTGGTTCGACGCGAACCTGCCGGCGGGGACCGAGTCGAAGCCGAAGGTGCGGGCTCCGGCGCGGTGAGTCTTCGGACACGAAGGCCGTCCCACTGGATGAGAAGGTAAGGACCCAGAGGAGCCACCCTGTCAGCGCGAATCACGAA # Right flank : TTGACTCAGCATCAGGCGGGAGGTGGGTAGGGGGGAGTTCGGGGAACAGGTCAGGGACTGTGGAGGCCGGATTCGGCGGGGGCCACGAGTGAGGTGCGCACGTGGTTGCGCCACTGACCGTTGATCAATTTTGTCGATATTGACGGTTAAGCCTCGAATGGGCGGCTCTTTTGAGCCTCATATCTCCAATATCGACAAAATTGATGGAGGGTCAGGGGCCGCCGCGGGGGCCGGGCTCGGCGGGGGCCACGAGCGAATTGAGCACCTGGTCGCGCCACTGGCCGTTGATGAGGAGGAAGTCGCGGGCGTAGCCCTCGGGGATGAAGCCCAGGCGGCGGAGGACGGCGGCGCTGCGCAGGTTCTCTGGCAGGTGGCTGGCCTGGAGCCGGTGCAGGCCCATGGCGCTGAAGGCGAAGTCGCAGAAGGCGCGGAGGGCCTCGGTCATCAGGCCCTTGCCCTCGTGGCGATGATCCAGGCCATAGCCCAGGTCCGCGGCCTGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACCTGTCCGACAGTCGGACAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //