Array 1 285689-284502 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBM01000006.1 Schaalia georgiae DSM 6843 G447DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285688 29 96.6 32 ............................G TCGGCGAGCGTGGCCTTCACGATGCGGATCAA 285627 29 100.0 32 ............................. TGGCGGGACTGGTACCCGGCGTCGCCGGAGCA 285566 29 100.0 32 ............................. TCCGCGCCGCCGGGATCACACCATCGGACCGT 285505 29 96.6 32 ............................G TCCGAGTCATTGGTTTTCTTCACGTCCCCGCC 285444 29 100.0 32 ............................. CGCTTCTCCACGGAGATCAAGCAGGCTATCGC 285383 29 96.6 32 ............................T TCGTGATCAACACGGTGTACACGAATGGTATC 285322 29 96.6 32 ............................T CGGGCAGCGACTCCACCGCCGTGGCCTGCCAG 285261 29 100.0 32 ............................. ACCGGCAAGGGATTGGTCCTCGGCATCGACGA 285200 29 100.0 32 ............................. ACCTTGGAGTACGGGCGCCTGAAGGAGAACAC 285139 29 100.0 32 ............................. ACGGTCCTGCTTCGACGAGTTGCACCGACGAT 285078 29 96.6 32 ............................G CGAACGGCTCCATCAGACGAGGCCCTCTTCGG 285017 29 100.0 32 ............................. GCCGTGACGATGGGGAGGAGCTTTTCTCCAAG 284956 29 100.0 32 ............................. GCCTGGAGCCGCCGCGAATCCACCGGCCCCAT 284895 29 96.6 32 ............................G TGGCGGCGGCTGAGGCGCGCCTCGCTGAGGCC 284834 29 96.6 32 ............................G TGGCGGCGGCTGAGGCGCGCCTCGCTGAGGCC 284773 29 100.0 32 ............................. CAGAGGCCCCGCCGCACCACAGCGGGTGGGCG 284712 29 100.0 32 ............................. TACACGGTATGCGACCAGACCATCACCCACCA 284651 29 96.6 32 ............................G CACCAGGCGCCGCCCCGCCGGGCCCGCCCAGC 284590 29 93.1 32 ................T...........G TGCATCAAGGAAAGAGGGGACTGGTTCTCAGC 284529 28 82.8 0 ...........C.C.......CA.-.... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.4 32 GTTTTCCCCGCACGCGCGGGGATGAGCCC # Left flank : TTGCACCTGTGGGACGACTTCGAGGGGACCGTCGCCGCGGGGGTGTCCTACGAGGAACGGGCCGTGACATGATCGTGCTCGTTCTCTCGGCCGTGCCCGAAGGGCTGCGCGGGCACGTCACGCGATGGCTCCTGGAGATATCGCCGGGCGTGTTCGTGGGAAACCTGGGCAGCCGCGTCCGAGAGCGGCTGTGGGAGATCGTCATCAAGACCATGGGGAGCGGCCGGGCGATCATGGTCTACAGGGCCCGCAACGAGCAGGGCCTCGAGTTCCTCACCTGGGGCGACCCCTGGCGCCCAGTGGACTTCGAGGGCATACGGCTCATGATGCGCCCAGCGGTCGCCCAAGGGCGGGGCCAGTACACGGATCCCGCAGACGCGCCCGACGCCACCCGCCGTTTGCGCGGGCGCCCGGGAATGAGTAGCTTTCAGAGAAGGCGTAAGGCTCGAGGGTTTCCAAGATCCGACCGGCCTGAGCGATAAAAGCCCAGGTCAGGAAGT # Right flank : TGCCCCGCCTCATCGCAGCCCTCGCCTGGCGTGGCGCCCCAGGGGGCTGCGGCCCTGGCCCCCGCCTCGTGCGCACAACCGCACAACCGTGCAACCGCACAACAAAATCCCCGAAGCCCAGGGGGCTTCGGGGAGGCGGTGGCTCCGACCGGCGTCGATCCGGTGACCTTTCGATTTTCAGTCGAACGCTCTACCAACTGAGCTACAGAGCCAGGACCGGGACCGTTACGGTCTGGTCGGCGACCCCGACGGGACTTGAACCCGCGACCTCCGCCGTGACAGGGCGGCGCGCTAACCAACTGCGCTACGGGGCCTTACAACAGGTAAGACCTATTGAATTATTGCGCTTCCACGATTGCAGGAGCCGTACCCCCAACGGGATTCGAACCCGTGTCGCCGCCGTGAAAGGGCGGTGTCCTAGGCCGCTAGACGATGGGGGCCGTTTGGCCGCCGGACTGGCGCCCGAAGACGAGGATTACTTTAGGCAGAACATGCCTTCC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176420-176208 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386870.1 Schaalia georgiae DSM 6843 G447DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176419 29 100.0 32 ............................. CGCCGACCGCGACGGCAATGGGCAGCAGGGCA 176358 29 100.0 32 ............................. ATGGTGCGCAGAGTTCGCATGGCTGTCCTGTC 176297 29 100.0 32 ............................. GTCGCCGGCATCCTCGGCGGCCTCCTCTACAC 176236 29 93.1 0 ......T....................C. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CACGCGCCCCCGCGCGCGAGGGCCGGGTG # Left flank : CGGTCTGGCGCAGGGCGTTCTTCGCAATGCCGTACAAGGAGGCGGGGGCGCAGGGCGTGTCGGCGGTGATCGCGCCCTCCCAGTAGCCGACCTCGTGCATGGAGCCCATAACGGCGAGGCGTTCGAGGCCGCCCTTGTAGAGGGCGTCGATCAGGCGGTAGTGGGCGGGCAGGTCCTCGATATGAGCGGGCGAGTTGTGGACGAAGCCGTCGCGCCAGGCCAGGTGGAGGACGGCGTCGGGCCGTCCCATCCGGTCGTAGATGTCGGCGCTCCCGTCGAAGATGTTGATGTCGAGGCGCCGCGCCCGCTCGTCGACGCCGTCGAGGCGCGGGTCGACGACGCTGACGTCGAGGCCCCGTTCCAGCAGCGCTCGGACGACGTGACGGCCGATGTAGCCACCGGCACCGGTTACGAGGACAGTCTTCACCATGGTTGGAAGTCTACCAACGCGCGCGGTCGGCGCTGGGTCCCGTTCCGCGTGGGGCAGGCGTGTTCTGGCA # Right flank : GCGCAGGGCTACTCGGAGCCGCCCTCCACGGTTCCCGCGACCCGCCACGTGATGAACGCCGCGGCGGCGCACAGCCCGATCACAGTGAAGTCACTGGCGCCCTGGAGGACGTTCACCACGAATTGGACGACAAAGCCGAGGGGCCGCGAGGACCCCTTCTGCAGGTCCGCCCACCACAGCAGGTACGTGCCCAGCGTCTGGCAGACGAGGTTGAGGACCAGCGCCCCCAGGGTGTACACGAGCGCCCATTTGCCCGTTGCCCGGAGTTGTTGACTGCTCATAAGCGCCTCCCTGGCGGATCGTGTTCTTCAGCGGCCGCCCTCCGCTGGGCTTCCCCCGCCTTCGCCCGGCCTGGCGGCCAGGTCCTTCCACCGCTATCCTCCATCCCCGGGGGCGAGCGGCGCAAGGAATCCACGCCCGAGCCCTGGCCCCTGTTGGCGGGGCCGCGGCGCCCTTGTCGTCGTGGCCCGGCCGCCCGCGACTCGTCCACGCCGCGCCAG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACGCGCCCCCGCGCGCGAGGGCCGGGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //