Array 1 37717-38160 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXF01000003.1 Cuneatibacter caecimuris strain DSM 29486 Ga0310506_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 37717 34 100.0 34 .................................. AGCGGGTCTATATGATCGATCGGGTGCGGATAGA 37785 34 100.0 34 .................................. AGAATAATCCATATTAGTAAAAACACTGTACTTT 37853 34 100.0 36 .................................. CTGCGTTTCTAAGGAGTACCCCTCCCGGGCTTGATC 37923 34 100.0 35 .................................. TCTCACACAATACAATTCCTGAATAATATGCTCAA 37992 34 100.0 33 .................................. AGTGATAATGTAATATCACTCATATCTCTGCGC 38059 34 100.0 34 .................................. AAAAATCCAGTCAAGCATGATTTATCACCTCCCA 38127 34 94.1 0 .............A.........C.......... | ========== ====== ====== ====== ================================== ==================================== ================== 7 34 99.2 34 GTCGAAGCCTTGCGTAGGCTTCGTGGATTGAAAT # Left flank : GTCGATCATTTCCGGATCAGTGACTTGATCCAGATGGTTCTGGGCCAGCGCCAGGCTTTCCCGGGCGGAAAGAAGTTCCCGGCGGAAATCCAGACGTCTCAGCTGTTCCTGGCGGGCTGCGGCTTTTTTAGCGGATAATGCTCTGGGGCGAGGTAACATGGCAAATCCTCCTGTTATGATTGATTTTTGTTATTGTCCTGCTAAAACATATGAGGACAGGCAGGGAAATATGTCCTGTGCGGTATTTTTATTTTTTCTTGCAGCAGGGTGATAGGGATGCAGGGATGTAAAAAATGAAAGATTTACAATATAAAGGAAGGAACCGACGGTGCGAACCACAAGTGAACATGATTTCCCAGGGGGATTCGCACCTGATAAGATGAGTATATTTGACGACAAAAGGGTGAAAAAGAGGAATGTGTATTGATGATCTCTTTCGAATGTGGTAATATTGAACAATAGGCAGGGCGCAGAGGGAATGATAATTGTGCTCGTTTGCT # Right flank : TTTTGGAGGTTTTTACCATTAATGCATTTACCATGTTGAAGCTTTGCACTGGTTCTGGATTTTAATATTTATAAAACCAAAGTTTTTTAGATAAAAATTAATAATTATTAAAATTCAGGAAAAAGTAAGAACAGTAAAGAAAAAATTAATTTTGGAAAATGAGGAAGGCATGGTATAATGTGAATGACATTGTACTTAAGCAAGCAAAGCACAGCGCTCCTGATAATATAAGCGCTGGATAGTTGCATCGCTGCTGAGCAAATGCCGCCTCCGTTCCGTTATGCGGGATGATAGAAATCCCATCCCCGGCCCTTATCCTCTGCCGCCCGGGCATAACGGAGCATTGAAAATTCGCATATAGAGCAACAGTTTGGTAAAAGGAGGAAATTTTATGTGGGATGATGACAAATTAGAAGAAACAGAAATTGAAGAATACGAGTCTGAACAGGAGGAATATCCCGGCGGGCAGGAAATATACCAGATGGATGCTCCGCAGCAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCTTGCGTAGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 1195563-1195337 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXF01000001.1 Cuneatibacter caecimuris strain DSM 29486 Ga0310506_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1195562 31 100.0 34 ............................... AATCTTCCATAATCTTCTGGTATTTCAAGGCCTA 1195497 31 100.0 35 ............................... ACGCTGTCGATCTCCGCAAACGGTGGAAAACAGCC 1195431 31 100.0 33 ............................... GAGAAGATGGACAAGCAGGAACAGGAAAAACTA 1195367 31 83.9 0 .................A.A..A...A...A | ========== ====== ====== ====== =============================== =================================== ================== 4 31 96.0 34 GTCTCCGCCGTGTGGCGGAGTGGATTGAAAT # Left flank : AGCGGGAAAAACTCGTTTTGGAATGTGACGGAACAATGTATAAATTATGGAACCAGGGAGCGAAATTCTGTTTTTACATATGTGCAATATAACCCTCAAATCCAGTAGATGGAATTATGTTGATCAATAGCATAAATACCAATATATATGAGAAGATCGTATTGGATGGTAAATGGATTTGGGCGAAAGAATTATTGATATTTTAGCTTTTTTTGGTTTGTTTTATTGCAGATGTATGGTACAATTTAAGAGTTATATGTCAATAAATTGAAGTACAATTTTTTCTCAGGAGGCTTATATCGTCATGTGAAATTTTTAATCAGTTTTTTGTGCGAACCATAAGCGATCATAAAAACTCTGGGAGATTCGCACCATTTAAATCATATAAAAAGTAATAATTTTTATTGAGTGCAATATTAAAAATAGTAAAGTGCGTGGAAAATGGCTCTATGATTGTTGAAGATGTATAATTTAAAGGAAATTTTTTGTGCAGATTTGCA # Right flank : GCATTTTCAAAAGCATTTTTAAAATTTAAGTTATTTCCGTCCAAGCCAAAGTTCTGATTTTACAAGAAAGTTAGTATTGTTCGTTACACTGCAACTGTTTTACCTTTAAAGCTTACACCACTATTTTGTGTAAATAGGAGCAGATCATTTTGAAGAAAGTAGAAACGAACTAAGATTAATCATGAGTTATTAAAAAATGACAGGAACAAAAATGCTGCGAAAAAAAATTTACCAGAATGAGTATGGCCAATGTCCCGTAAACCCTCTCAAAATATTGGCAGGAGTGGCAGGCGGACGACTGCAAGTAATCTTGGAAATGGTAGAAGTCAGGTATCTTCTGATTAATATAAAGTCCCTTGATGGAATAGCTTTAGGCTTTAGATAACATACAATTACATGAAAACCTTTCCTTTCTTTTTATTTCTTTGCTTAAGCAGTCTGTGAAAAATAATTAACTGCAAATATTATTAACTGCTGTGCGGTGAGGGCATCCAAACAGC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCCGTGTGGCGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 1199067-1198566 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXF01000001.1 Cuneatibacter caecimuris strain DSM 29486 Ga0310506_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1199066 33 100.0 37 ................................. GGGAAAGTACTGATCCATGTGGTAAGCCCTACGAAAG 1198996 33 100.0 34 ................................. GTCAATCGCGTTTCGCTGGCTACTGTTAACGATC 1198929 33 100.0 33 ................................. CCTGGTGTCCGTAGAACTTATAAGTTCCTGAAA 1198863 33 100.0 34 ................................. AGTTATGGGAACCGTACAAAGCTGGAGATCAATG 1198796 33 100.0 33 ................................. ATCCAGTGCCACCGGTGAGTCCGCTACAGAGTT 1198730 33 100.0 33 ................................. TTTCCCATAAAGTCTTAACATCCCTTAGCAGGT 1198664 33 97.0 33 ................................C AGTTCTTGTATAGCGTCCCGATCATTAGCTGAT 1198598 33 93.9 0 ............A...................C | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 98.9 34 GTCAAGGCTCGGGTGAGCCTTGAGGATTGAAGG # Left flank : CGAATACCCGCCCTTCTTCTGGAAGTAGGTGAGGAGAACGATGCTTGTTTTAATAACATATGATGTGAATACAGAGACGGACGCAGGGAAACGACGGCTCAGGCATGTGGCAAAACAGTGCGTAAACTATGGGCAAAGGGTTCAGAATTCGGTGTTTGAATGCAATATGGATGCGGCGAAATGCAGGGAAGTAAAGGCGATTCTCGAAGGAATTATTGATAAAGATGTGGATAGCCTGAGATTTTATTATCTTGGCAACAACTATAAAAATAAGGTAGAGCATGTTGGAGCAAAACCGGGATTTGATGTTATGGGAACTCTGATTCTGTAGTGCGAATGGTATGTGAACATGAAATTTCTGGGGGTTTCGCACCTGAATTATGAGATGATTTTTGAGAATAGGAGTGAAAGAAAAAAGATCTTGTGATTGGTTTGGCAAATGTGTACAAAGAGGAGAAGGGTTTTAGGGAAATTGGGAGATGTTTTTGTGCATATTTGCG # Right flank : ATTGCAGACCTAGGGCAACAGGCAGTATGTGAAAGTCAAGGCTCGGTTATTTTAAAAGCAAGGGTGCCAAAGGAAATTAGAGTATCCAATGTTATTGTAGAAGCAGCTCTGGAGCGGATTTGTGAGATTTGTAAAATCAAACTTCGGCGGATGAAATGTCTGAAGGGAATGGATGAGTTTTGGGTAGCGAAGAGGCAACACAGATAGAGAATATGTATGAAGCATTTGGCGGATTCGGTTTGAAGAAAATGGGCGGGTTAATGTGGATCTGTAGAGAGGGGAAAACCATTATGGCCAAAGGACTTATTGATTTACTATTAGACAGTATATTTGATGCGAATTGGACAGGGCGTCATGGAGAAAAATTGACTGAACGGGAGCTTAAATTAGTCAAGCTGTTCGGACGAAAAGGACGCATATTGCGAAATGTATATGTGCCTAAAGAAAATGGGGAGACATCGGAAATTGATGTGCTCTTTATAACACAAAAGGGAATATTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGGCTCGGGTGAGCCTTGAGGATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 174527-175565 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXF01000005.1 Cuneatibacter caecimuris strain DSM 29486 Ga0310506_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 174527 33 100.0 34 ................................. ATAACATCTTTAAATAATGGTACAGTAGAATTCA 174594 33 100.0 34 ................................. TTAAGTTGCTCAATCAAATCCTCAAGAATCTGAG 174661 33 100.0 33 ................................. TTCATAGTTGACTATATCCCGAAAATGTAATGA 174727 33 100.0 33 ................................. ATTTTGTACGTGCGAACTCATCCGGAGCATATC 174793 33 100.0 34 ................................. AGTTCCTCTCTCTGACTGCTCTACAGCGTTCCAT 174860 33 100.0 34 ................................. GCAATCAGTTGTTGAGTTATCCGAAAGGCCTTGC 174927 33 100.0 34 ................................. TCTTTAATAAATGACGCCCCGGCAACGATTAAAT 174994 33 100.0 33 ................................. CCCTCTAGGAAATACAGTTGGAAGATTCTTCGC 175060 33 100.0 35 ................................. CAATTGGCATACGAATCATTAATCCATGCGCATTG 175128 33 100.0 35 ................................. ACGGCGCAAGATTCGTGAAATGCAAAATCTAAAAT 175196 33 100.0 37 ................................. ATCGGTTTTGAAGGTTTGATCGTACCCTTGGGGGCCG 175266 33 97.0 35 ........T........................ GTGGGGCGTATAATCCCGCAAAACTATTTAGATTC 175334 33 100.0 34 ................................. ATAATGGTGCAGCTGTTTTTCGTCATAGAGAGGT 175401 33 100.0 34 ................................. TGCCTGGGAATGACGATTGATGAGATTGCGGTAC 175468 33 93.9 32 ........................A...A.... TCTTTCAGCCGGTCCAAACGCCTGTAAACCGC 175533 33 72.7 0 ..........AG..AA.AT.......C.T..G. | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 97.7 34 GTCGAGGTCCGTGAGGGCCTCGTGGATTGAAAT # Left flank : TTGTAGGGGATGTGGAATCCATAGCGGATCAAATACTTTTGATGCAGTCCGGGAGCCTGGTTAAAATGGGGACTGTGGAAGAACTGCTGGAAAGTGTGAAAGGTCAGGTGAAGGAGACGGTAACTGGGACGCTCAGCCTGGAAGATGTTTATCTTCACTATTTAGCAGAAGAAGAGGAAATGGCGGTATAAATTGGAGGAAAGGTCTGGCTCAGAGTTAGTCCGTTTGTAGTTGGAGAGATGGATTTCAACCAAATTTTTATTCAGGTTAATGTATGGTAGCTGGGACGTTAGCGGCTGGTGCGAACCAGAAGTGAACATATTTTTCCTGGGGGATTCGCACCTGAAAATTTCTGTCTTTGGCATAAAAATAATCAAGGTGGCAGAGAAATAAAAGAAATTAAAGGTATACATTGTTTAATTTGGGCTGGGTAGTAGGGGGATTTGGTACAGGTGATTAGAATACTGTGAAGAGTGGGGGAATAATTGTGTGAATTTGCT # Right flank : TTTCCGAGTGTAAACGGTTGCAGCAGAAAAATCAAGCTAAGATCCATGGGACTTTGTGAATCAAACTGCTCTAGTCAGCCCCGCCCTATTTCTTCTATTTATTGTATACTATATCACAGCCATATTGTCCTTGCCTGAAAAATACATTAAAGGTATATTAGATATAAATACAAAGGAGGGTGCCATGGAGAGAAAGGATATGCGTATTAATGGGAAGAAAACAGGTGAGAAAATCAGCATGTATATGAAGGAAATAGGCCTGACAGTTCCGGAGTTTGCCAGAATGCTTGATGTTACAGAAAATGCAGTGAGAAATTATATAAATGGGCACAATCTTCCTACCGCAGAAAGGTTGTATGCCATATGTAAAATATTACATAAAGACATCAAGGATATTGTAGTGGAAATAAAAGAGGATGAGAAAAAGCAGGGGGCGAGTGATGACAAAGTATGATCAGATCAGAAAAGTGGTGGCTAAAATTATGGAGGACAGCGAAAAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCCGTGAGGGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //