Array 1 33964-31390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSI010000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 1623 CIRM_BIA1623-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 33963 28 100.0 33 ............................ CCCAAGCAATTCGCCGTCAATGATGGCAACTGG 33902 28 100.0 33 ............................ CGAAGGGGCGGGCGTTGAATTGCTTATCACAAG 33841 28 100.0 33 ............................ CCTGCTGAATAATGGCTGGCATTGTATCGTTGG 33780 28 100.0 33 ............................ TCATGTAATTCCAAAGCGTCGAATTGCCGATGC 33719 28 100.0 33 ............................ CGCAGTACGCAACACACGCAACCACGTAAGCCG 33658 28 100.0 33 ............................ CCAGGCAACTGCAGTTGGTCAACACTGCAGCAA 33597 28 100.0 33 ............................ CTACCAGGCAACACTTCAGTTGCGGCCGGCTGA 33536 28 96.4 33 ..........................A. TGCGTCCATGAACACTTTAACAGCAGCCGTGGA 33475 28 100.0 33 ............................ TGATCTGGGTTAAACCTTATTGAATAGACAACC 33414 28 100.0 33 ............................ CCATATAGTTGTGATTGCCATTGCCGTCCCACG 33353 28 100.0 33 ............................ CGCCTGGCAGCCTGGCAGTCTAGCCGGCAACCT 33292 28 100.0 33 ............................ TCGGACATTTCTCTAGCTACATAATTTTTAAAT 33231 28 100.0 33 ............................ TTATATGTCTTCGTGTCTAACTCCTCCGAGATC 33170 28 100.0 33 ............................ TGTCTGCTCTTCCCTGTTGCCCGCTCCAGCAAA 33109 28 100.0 33 ............................ TGTTAGATATTATTAACTTTTTTAAAAATTTGA 33048 28 100.0 33 ............................ TAAAAGCACGCTTATAAACGTGCTTGAATAGGC 32987 28 100.0 33 ............................ CAGATGACCCAAAGCGGGCGAAGTGGTAGGCGT 32926 28 100.0 33 ............................ CTTGGTAGCACGTCCCGCCGCCGATGTCTAGCA 32865 28 100.0 33 ............................ CGGACTAAGACATGCATGCATGCAAGACAATAG 32804 28 100.0 33 ............................ CAGTTTTCCGTCATCTGGATCGTTGACGTCGCT 32743 28 100.0 33 ............................ TGCTCATGCAGAATTATGGGGATCTATCAATGC 32682 28 100.0 33 ............................ TAACAAATCCTCCTTCTTAAAATTCTGCCATTT 32621 28 100.0 33 ............................ TATTGAGTTGCTAAATGGCGCCTTCTTTTACTA 32560 28 100.0 33 ............................ TCATTAAGCACTGCAGTGATGATTTCCGGGTGT 32499 28 100.0 33 ............................ CCCTTTAAAGGGTCAAGGCCTTTATTTAATCTA 32438 28 100.0 33 ............................ CACTTATTATTTTATTACCGTTTTGAAAAGGTA 32377 28 100.0 33 ............................ CAAGTTCAAAGCGAACCGTACGAGTCTCTGCAA 32316 28 100.0 33 ............................ CCTGGCCAGCTGCGTTGCGTGTGGTTGCGTACT 32255 28 100.0 33 ............................ TAACAGTATTTTTTGCGCTTAGTTTCCTTGGCC 32194 28 100.0 33 ............................ CACTTATTATTTTATTACCGTTTTGAAAAGGTA 32133 28 100.0 33 ............................ CAAGAGCTTGACTTTTGGCACGTCGGTTGGGCT 32072 28 100.0 33 ............................ TGTAGGAGGCAGCCCGCCAAATACAAGGCAGCC 32011 28 100.0 33 ............................ CTTACTTTAGCAGATCGCCCCATAGCAATCTGA 31950 28 100.0 33 ............................ CGTAAGGAGACACCGATGGAAAGAAAATTTTTG 31889 28 100.0 33 ............................ TAATCTTCATAGGAGTTTTTTAATGTCCGCTTT 31828 28 100.0 33 ............................ TAGCAGCCTCTTGGCCAAAAATGCGCAAGTAAC 31767 28 100.0 34 ............................ TCACCGGGCACTGGACTCGCACCAGTCTAGCGTC 31705 28 100.0 33 ............................ CCGGTCAAGGTCCCGCCAATCTCCTAAAATCAG 31644 28 100.0 33 ............................ CAATGGACTTTTTTTGGTGCTCCGTGAGCCGCC 31583 28 96.4 137 ...........................T ACATCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 31418 28 78.6 0 ...........AT.T.C....A.....A | T [31411] ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 41 28 99.3 36 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTATCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGTATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACGGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTTTGCCTCTGACGACAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCACCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //