Array 1 31909-33076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPSZ010000012.1 Pseudomonas aeruginosa strain KPA63 contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31909 28 100.0 32 ............................ GGCCAGGGCAGATCGGTCTCGCGGCACTCGTA 31969 28 100.0 32 ............................ TGGCGCGACGAAGAACCGTCTGCACTCGCATA 32029 28 100.0 32 ............................ TTTGAGCAGTGGGGCGGTGGTCTGTATCGAGG 32089 28 100.0 32 ............................ ATATCCGGAGCGTAGGCGGGGACGGGCAGGGC 32149 28 100.0 32 ............................ TTCTGGTGGGCGAGGGCGGCGGGCTGAAAAGT 32209 28 100.0 32 ............................ TACCCTATGACCGGAGGCTGTTTCAGGGGGTG 32269 28 100.0 32 ............................ TATGACCACCCGCCCCGTTCGCTCGATCATCG 32329 28 100.0 32 ............................ ATCAGCTCAAGGCGCTGGGTGTTAAACGCCTT 32389 28 100.0 32 ............................ TGCAGCAGACGGTTGCGGTGCGCCCAAGACAC 32449 28 100.0 32 ............................ TTTTTGCGTCGCGGGATAGGGGAGTGTTTCGC 32509 28 100.0 32 ............................ AGTTGCGTCGTCGAAAGAGGCTCAGGCTATTT 32569 28 100.0 32 ............................ TTGGCCAGCAGCAACCCGAACTCATGGCAACT 32629 28 100.0 32 ............................ GTCACCACGACAACGGCAGGCGATGGGCTGAC 32689 28 100.0 32 ............................ TTCGATGAAATCAAGCAGTCGCCTGACTTCGG 32749 28 100.0 32 ............................ AGGTCCGTGCGGCGGCCAGGTTGGATGTCCGG 32809 28 100.0 32 ............................ AACCGCAGAAACACTAATATCAAACCTAACCC 32869 28 100.0 32 ............................ TGCGACGCCGCCGGAACGCGCGGAGCAGATCG 32929 28 100.0 32 ............................ AACAGGTCGAGTGGTATGGCCGGAAGCTGGAC 32989 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 33049 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCAGGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43298-41951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPSZ010000012.1 Pseudomonas aeruginosa strain KPA63 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43297 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 43237 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 43177 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 43117 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 43057 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 42997 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 42937 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 42877 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 42817 28 100.0 32 ............................ AAGCGGCTGCATAAGGACCCGGACAATCCGGA 42757 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 42697 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 42637 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 42576 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 42516 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 42456 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 42396 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 42336 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 42276 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 42216 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 42156 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 42096 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 42037 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 41978 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAACCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 500902-501409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPSZ010000004.1 Pseudomonas aeruginosa strain KPA63 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 500902 28 100.0 32 ............................ CCTGGCGAAGGGCGGGATGACAAGGGCAGAGC 500962 28 100.0 32 ............................ TTCACCGTCACCCAGTCCTGGGTGGCGTAGAC 501022 28 100.0 32 ............................ TTGGCAGCTGTAGCCAGAGCCGGATGCGAAGC 501082 28 100.0 32 ............................ AGAGCGCTCTGGTGGACGGCTGGGTACGACGA 501142 28 100.0 32 ............................ CGTATCAGCGGGCCGCCAATGAAACCGTCGAG 501202 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 501262 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 501322 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 501382 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //