Array 1 1007358-1009094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072204.1 Escherichia coli strain LWY6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1007358 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1007419 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1007480 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1007541 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1007602 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1007663 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1007724 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1007785 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1007846 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1007907 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1007968 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1008029 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1008090 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1008151 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1008212 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1008273 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1008334 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1008395 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1008456 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1008517 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1008578 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1008639 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1008700 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1008761 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1008822 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1008883 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1008944 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1009005 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1009066 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1024596-1025296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072204.1 Escherichia coli strain LWY6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1024596 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 1024657 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 1024718 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 1024779 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 1024840 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 1024901 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 1024962 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 1025023 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 1025084 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 1025146 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1025207 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 1025268 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //