Array 1 1200328-1199171 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR134520.1 Streptococcus agalactiae strain NCTC13947 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1200327	    36	 100.0	    30	....................................	AAAACGTCGTAAACGTGTCATTGATTGTAT	
   1200261	    36	 100.0	    30	....................................	AAAATTGATTGACAGTCGGAACAGTCGTCT	
   1200195	    36	 100.0	    30	....................................	GGTTCTTCCTTATGACGTTATCCTGAAGGA	
   1200129	    36	 100.0	    30	....................................	TCCTCCTGTCCCTTCTTTCCAATTACTGTC	
   1200063	    36	 100.0	    30	....................................	AGGCTTATTATGATAATAAACAATATAAAC	
   1199997	    36	 100.0	    30	....................................	TAGTAAAAAAGCTAAACTTAATAAAAAATA	
   1199931	    36	 100.0	    30	....................................	TTTTGGAAAGCTCTTTGGAAGGGAAGAGTA	
   1199865	    36	 100.0	    30	....................................	CGGCTATATAAGACAGGTTTATGAGGATAG	
   1199799	    36	 100.0	    30	....................................	TCCTGTTACTCGTAAAGTCACTAAGACAGT	
   1199733	    36	 100.0	    29	....................................	CTTCCCACTTAACTGTTTTTAGAAAGTGT 	
   1199668	    36	 100.0	    30	....................................	TCTTCACGTTTGTTAGATTCTGATTTTGAT	
   1199602	    36	 100.0	    30	....................................	TCAGTTGACCAGAATGAATCTCAACTTCAT	
   1199536	    36	 100.0	    30	....................................	ATCTACATCATTAGCGATCCTACGCCAGCG	
   1199470	    36	 100.0	    30	....................................	TATATAAATATCTCAATTATGGTTGTGAGT	
   1199404	    36	 100.0	    30	....................................	ATCTTCTTTTGACCTAACAAAAGGATATGT	
   1199338	    36	 100.0	    30	....................................	TGGCGAAAAATGGTATTATCTCAAAGGCAA	
   1199272	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
   1199206	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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