Array 1 416-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHF01000025.1 Acinetobacter baumannii AB_1649-8 AB_1649_8_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 415 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 355 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 295 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 235 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 175 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 115 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 7 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GAGATATTGGCGTGACTGG # Right flank : TGTTTCAAAAGCTACACCATCAAAACC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 260-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHF01000033.1 Acinetobacter baumannii AB_1649-8 AB_1649_8_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 259 30 96.7 30 ............................G. CCAAAACACGAAACGTTTGCCATTAATGGC 199 30 93.3 30 ............................TA CAGCAATAACGACCAAACCGATATAGGTAA 139 30 100.0 30 .............................. ACGAACATCATTTACTTGCTGAAGTTGCTT 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 4 30 97.5 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : CTGCTGCTGAGGTCATTCAAT # Right flank : TGCTCTCAATAATTCGCAAGTAAAAGTGGATGTTCATGGCGGCATACGCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19074-14720 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHF01000078.1 Acinetobacter baumannii AB_1649-8 AB_1649_8_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19073 30 96.7 30 .............................A TAAACCATTTGACGTTGACCAATCGCAAAT 19013 30 96.7 30 .............................C AGATGAAACGTATGCTTTGCCTTCAGCTTT 18953 30 93.3 30 ............................TG GATCTGGTCGGCGAACACTATCATTTACAC 18893 30 96.7 30 ............................T. CCAAAATGGTCCTTTTTACCCCTTCATCAA 18833 30 96.7 30 ............................G. TGAGTATGTCATTGGCCACAACGTTGAATA 18773 30 93.3 30 ............................CA GAACAATAGGAAGCCTGATGTGCCATCCCG 18713 30 96.7 30 .............................C GCTGCGGGATTTGTTGAAGTGTTTTCAAAT 18653 30 93.3 30 ............................GA TTATTCTGGTTATAACTTTGTCTGTGTAAT 18593 30 100.0 30 .............................. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 18533 30 96.7 30 .............................G CCACGTCAACAGCAGCATTGGCATTAGTAA 18473 30 93.3 30 ............................GC TAAAGGCTAAAGCAACCAAGGTGAATCTTA 18413 30 93.3 30 ............................GA CGAGCAACACGTCAACGAACTCAAAGCAAA 18353 30 93.3 30 ............................GA CATGGCGAGTTGCAGCAGGAATACCATAAT 18293 30 100.0 30 .............................. CTTGAGTTCAAATAAACGGACAAATGGGAT 18233 30 93.3 30 ............................GA GTAATGCAGCACCAACAGCAGTAATCGCAG 18173 30 93.3 30 ............................CA AACGTGGGTTACATCTAGTTGCCTGAGGAG 18113 30 93.3 30 ............................TA ACTTAGACTGAATATCTGATGCTAAAGATT 18053 30 96.7 30 .............................G CCGGTGTTGATCTGATATGCGTTAGCCATT 17993 30 100.0 30 .............................. ACGCGCCAAACATGAATGGGTTTAAAACGT 17933 30 96.7 30 ............................T. TGTGCCTCAATATGATTTCAAATATGGTTT 17873 30 93.3 30 ............................GC CAGGGGCAACATACCGCGCTAACGTTAGTG 17813 30 93.3 30 ............................GC AGTATTGACTGTCGGACTTGTGACAACCTG 17753 30 93.3 30 ............................GA CAGGAACCGTCACTGAAAGCGCACAGGCTC 17693 30 96.7 30 ............................T. GTTTCAGTTGCATAGTCAAACGATGAGAAC 17633 30 100.0 30 .............................. TAGCAGGTGATTACGCAGTCTTATCTAATG 17573 30 100.0 30 .............................. TAAGCAAGGGCTGACCCCGACCGCCGAGCA 17513 30 100.0 31 .............................. TGACTTACAGCGTTATGAGAGATCCCTAGTT 17452 30 93.3 30 ............................TG ATGATTGGATAGAGATTCATGCGTTAGATT 17392 30 96.7 30 ............................G. AAAAAAGAACATTTCCCGCCAAAATTGACG 17332 30 96.7 30 ............................T. TGGCAACCAGTCGCCCTATGCGACCTGATA 17272 30 93.3 30 ............................TG TAAAAAAGTTTAATAATTTTTTCAGTGAAT 17212 30 96.7 30 .............................G TTGCGATTCTTATTATGCGTGAAGTTACTA 17152 30 100.0 30 .............................. TCACGGGTAAAAGCTGTTTGACAGCTAAAT 17092 30 100.0 30 .............................. TGGGGGTACTGCTGCTGAGGTCATTCAATA 17032 30 96.7 30 ............................T. GTAACAACTTTAATGGAGAAGCCTTAATCT 16972 30 100.0 30 .............................. AACGAGAAGCGTTGCGTAGACTTACAACTC 16912 30 93.3 30 ............................TC TTGTTATTTCTGGTAATAAATATCAGAACA 16852 30 93.3 30 ............................TC AAATCTAAGCCATGCTCATTAGGCATAGGT 16792 30 100.0 30 .............................. CCTGTCTCTTGGTCAATCTTGGCACGTAGG 16732 30 100.0 30 .............................. TACCGACTGATTGTTGAGTGGCAATGTTAA 16672 30 96.7 30 ............................T. ACACATGAAGTCAGCAAATGCCACCATGTT 16612 30 96.7 30 ............................T. GAATCGGCCGCTTTGCGTATAAACACCACC 16552 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 16492 30 93.3 30 ............................TG GAAGTCATGAATGTAGGTGTTGAGGATGGC 16432 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 16372 30 93.3 30 ............................TG ATGCGGGTTGTCCACCAGTTATGACTACTT 16312 30 93.3 30 ............................CC AAGCTGTGAATGTTGGTAATGCTTTAAGCG 16252 30 93.3 30 ............................CG TCAAAACAATCAAAAAAGCAATGAGTACAA 16192 30 96.7 30 .............................G TGAATGGGATTTATTCGCAAGGTGATATTA 16132 30 96.7 31 .............................A AAAGTTTTTTTGACAATCAAGCCGGCAAGTT 16071 30 93.3 31 ............................TG CATCGAAGTCATAGAACGCTTTGAGTTTCCA 16010 30 93.3 30 ............................GC AAGTGTCACCTTTAAGTGCACGGAAGAAAT 15950 30 93.3 30 ............................TC CATTCTCGCTAAGTGGCATCACACGCGATG 15890 30 96.7 30 ............................T. GGTTGTTTAGTAAGTTCAAAGCCCGTTGTA 15830 30 93.3 30 ............................CA ATGGATTTAAAGATTTCAACCGCTTGGGAG 15770 30 96.7 30 .............................G TTGATATGATTATTAATATTAAAGTTGTTT 15710 30 93.3 30 ............................TG TGCCCATTCCCGCAAACACGGCGCAACGCT 15650 30 93.3 30 ............................CA TGACCCAACCACGTAAATTCATACCACACG 15590 30 93.3 30 ............................GC TCCGTAATTAATCAAGAAATAATCAAATTT 15530 30 96.7 30 .............................G TAGTTGCACCAGACTCCGCACAATCTAAAA 15470 30 96.7 30 .............................G CAAATAGATCAACTGGTGCGCCCTATGAAT 15410 30 100.0 30 .............................. CATCGAAATTTAGTTCTAATTCTTTAATTT 15350 30 96.7 30 .............................G TCTTTAATGTCGGCAACATGCTGTGCAAAA 15290 30 96.7 30 ............................G. AAATATGCTGCTTTAACCCGCCAAACGAAT 15230 30 96.7 30 .............................C CAGAAAAGCAGAGTAAAGCTTCACAGCCAT 15170 30 96.7 31 ............................G. AAAAAAGAACATTTCCAGCAAAAATTGACGA 15109 30 96.7 30 ............................T. GCTGCCTGCAAACTTGTTTGGGGCTTTATG 15049 30 96.7 30 .............................C TGGAATTCAGCAGTAAATAAGGGGTTAAGA 14989 30 96.7 30 ............................T. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 14929 30 93.3 30 .......T.....................A CGTGAACAATTGTTTTAGCTTTGAACATTA 14869 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 14809 30 90.0 30 A......A.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA 14749 30 70.0 0 .......A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 73 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCTACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //