Array 1 40353-39407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZPR01000148.1 Escherichia coli strain HT2012165 Scaffold_cov_50.51_scaffold148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 40352 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 40291 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 40230 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 40169 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 40108 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 40047 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 39986 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 39925 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 39864 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 39803 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 39742 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 39681 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 39618 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39557 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 39496 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39435 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67426-66055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZPR01000148.1 Escherichia coli strain HT2012165 Scaffold_cov_50.51_scaffold148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67425 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 67364 29 96.6 32 ...........A................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 67303 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 67242 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 67181 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 67120 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 67059 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 66998 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 66937 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 66876 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 66815 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 66754 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 66693 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 66632 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 66571 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66510 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66449 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 66388 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 66327 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66266 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 66205 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66144 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66083 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //