Array 1 5017-4744 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCV01000001.1 Roseospirillum parvum strain 930I, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5016 29 100.0 32 ............................. TCGCGGGCTACCTGGGGCACTCGCAGGCGCGG 4955 29 100.0 32 ............................. GAGGCCCGCGAGGACTTCCGGGCGAGACGCTA 4894 29 100.0 32 ............................. AACCGGGTCACTTTGCTCATGTGGAAAACCCC 4833 29 96.6 32 ..................A.......... GACTTTGAGATGAACCGGCTGGATCGGCTGAT 4772 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : TACCAGGGGATCAGGCTGACCCCGGCCCAGATCGTCGCCGCCGCGGTGGAGGAAGGGGTCGACGTGGTCGGGCTGTCGGTGCTCTCGGGCTCCCACGTGGCGCTGGTGTCGGACGTGGTGGCGCGCCTCGCCGAGGCCGGGCTGGCCGGCCTGCCGGTGGTCGCCGGCGGCATCATCCCCGAGCCCGACGCCGCGCTGTTGAAACAGAAGGGCGTGGCCGCCGTCTACACCCCCAAGGACTTCGATCTGACCCGCATCATGGGCGACATCCTGACCCTGATCGACCCCGGCGCCGTGGCCGCCTGAAGGCTGGGCAGGGGACGCGGCGCCCGCCCCGCGCGCGGCCAAACCACCTGGACGACCAACACCTGCGGCTGCTAGCCTGAAGGGGCTGACCGCCTCCAGGGGAACGGCCAACGCGCCCCGGGACGAAAAGCGAACATTTCGGTGGCTTTTGGACATCGTGAAAACCCAAGCAAACTCAACGCTCTCCAAGAAGA # Right flank : GGAAAACGAGGCACCGCGCACCACCGGCCTGTGCGTTCCCCCCCCCCACGCGGGGACACGTCTGCGCTCAGGCGGGGGTCGTTTTGGCGGCGCGCCATCGGCGTGGCGGGCCCGCCCCCGTTCTCGGCCCCCTACACCGGCACGATCTTCCCCGGGTTGAGGATGTTGTCGGGGTCGAGGGCCCGCTTCACGTCGGCCATCACGCCCAACGCCTCGCCGTGTTCGGCGGCCATGAAAGCCATTTTGCCATAGCCGATGCCGTGCTCGCCGGTGCAGGTGCCGTCCAGCGCGATGGCGCGGTCCACCATGCGGGTGTTGAAGTGTTCCACCTCGGTCACCTCGTCGGGGCGCTCGGGGTCGACCATGAAGACCAGATGGAAGTTGCCGTCGCCCACGTGGCCGACCAGGGCATAGGGCACCGAACAGTCCTTGAGGTCGGCCTCGGTCTCGGTGATGCACTGGGCCAGTCGGCTGATCGGCACGCAGACATCGGTCGGCCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1118-723 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCV01000010.1 Roseospirillum parvum strain 930I, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1117 29 100.0 32 ............................. CTGGATTTCCAGCAGCGCCTGGGGGTGCACGG 1056 29 100.0 32 ............................. TGTCGATCACCAGCGGGTCGGGCAGCGGCATC 995 29 100.0 32 ............................. GGGCATGATATCAGCCGGGACAGCGTGCGCAC 934 29 100.0 32 ............................. GGAATTACCCGGACAACCCGCCGGGCGTCTGT 873 29 100.0 32 ............................. TCGCGCATGAGGGTGGGATGCATGGGCTTGTC 812 29 100.0 32 ............................. CCTCGGGGCTTGCGCAGCTCTCGGATTTGATT 751 29 82.8 0 .........GT..A..C........G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCACCCGCGTGGGGATGAACCG # Left flank : GCGATCAGGGGCACCGGGGGTAGGGCGATGATGGTGATCGTGGTCGAGAACGTGCCGCCCCGCCTGCGTGGCCGCCTCGCGGTGTGGCTGCTGGAGGTGCGGGCCGGGGTTTATGTGGGCGTTTACGGGCGCCGCACGCGCGAGATGATCTGGCAACAGGTGCTCGACAACATCGGCCAGGGCAGTGGCGTGCTGGCCTTCAGCGCCCCCACCGACGCCGGCTTCGAGATCGACACCTGCGGCCCCAACCGGCGCCTGCCGGTGGACTATGACGGCTTCCGGCTGGTCGCCTTTCAGCCCCGGGATGCGGCCGTGGAGCGGCCGGAGGTCTCCGGACCGGACACGCCCGGGGACGAAAGCAACGCGGCAACCAAGATGGAAGCCAATATCGAAACCAATATCGAAACTGGGCCCGGACGGACGCCCTGAACAGGGCATGAACGCTCGGTGGCTTGTTTGACATTGTGAAACGTGTTTAAAATCAGGGCGCTCTGGAAAGA # Right flank : GGGGATTGAAGGGGGGCTGGATCGCCGGAGCAGCCGATCCGCCATGGAGGGGCGGGTGGGAGGGGTGCGGCCTTTCCTGGGCGCCTTGATCGTGGGCTCGACGGGCGTAGGGTAAAGGTTGGTGACATCGCCGAAGGTGCCCATCACCCTCCCAAGGCGATCACACTACTTGAGGGGGGCCGGATGGGCCGGGCCCCCTCAGTCTGTTTCGAGCCCCCTCAGTTCACTTGCCCCGCCAATGGAGCGCCGCTCGGTGTTCCCCACCCGGGTGGGGATGAACCGTCAATCGCGCCCAAAGCGGAACGCGGCTCTCCCGCTGACCTGAAGAGGTGTGAGCGCCAACCTGATCGGGCGGTTGGCAAGCCAGCGGTGGTTGGCGCGCCCGTCCGCGACCACCGCCTTTCGCCTTCAGGGTATATCCGCGCTGTCGGTGGATCAAGACCACCCCAGGGCGCCATGTCGGCGCGTCTCGCCTCTCACGGCGGATCACGTTTGCCCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACCCGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4155-126 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCV01000013.1 Roseospirillum parvum strain 930I, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 4154 36 100.0 36 .................................... CAAGGCGGAGATGCCACCCTTGCCACGCCCCCCGCT 4082 36 100.0 36 .................................... ACCGCATCCAGGAACGCCGCATCCACACCGACGTGG 4010 36 100.0 38 .................................... CAGGTGTACGCCGCGCCGCTGGTCGCCGCCATCGACGT 3936 36 100.0 35 .................................... GAGTACACCCCGTGACCGTCTTCCCCCCATCGACG 3865 36 100.0 38 .................................... CCCGGGAGTTTTGTCGTGCGCAAAAAAGCTCGACACGC 3791 36 100.0 38 .................................... GTGACGTCGTGCGTTTCCCGTGCATCGGTGTAAGTCTT 3717 36 100.0 37 .................................... GCGACGTCGTGAGTCTCCCGTGCGTCCGTGTAGGCCG 3644 36 100.0 36 .................................... CATCTACCGGGAATTCGGCATCAACCCGGCCCAGGC 3572 36 100.0 38 .................................... CCCCCACTCACGGACACGACATGATGGACCCCGCTCAT 3498 36 100.0 39 .................................... GACCGCCCGGCGGAGGTCTACTCGACCGAGGAATCGGCG 3423 36 100.0 37 .................................... GGGATCATCCCGCCGTGGCGCGGGGACCGGGTGCTGG 3350 36 100.0 37 .................................... TTGTCGATCGCCCGGGCCAGTTTGCCGGTGCGCTTGG 3277 36 100.0 37 .................................... TTCAGATGGATGATTTGACCACTCAGGCACAACAGCA 3204 36 100.0 39 .................................... ATCGTCAACGCGGCCGTCAGGTAGTCGCTCACGGCAAAT 3129 36 100.0 38 .................................... GTCCATCGCTCTGGGACTCCCCTTTCATGCTCGCGGTT 3055 36 100.0 37 .................................... GGCGGCGCGCCGGCGCGCGCCCTCGCTGGCCTGCGGC 2982 36 100.0 39 .................................... TCCGGTGGTGTGGACATTGCGTTTGGCGAGAGCGCGGAC 2907 36 100.0 36 .................................... CACACCTCGCCAGCGGATAACGTCGCCGGTGTCAAT 2835 36 100.0 38 .................................... ATGTACAGTTCCCAGTCATCCTCATCATCCAGTTCTTC 2761 36 100.0 37 .................................... GCGAGCCCCCGGGGTCGTCGTTGGTGGTGCTCACCTC 2688 36 100.0 43 .................................... GACCTCACTTCCTCAATGGTGCATGGGTAGATGCTCCGAAGAT 2609 36 100.0 37 .................................... CCCAAGTCGTTGCGCTCCAACTCAGCGAGGCGCAGGT 2536 36 100.0 39 .................................... GGTGCGCGGCTGGAATCGCTGCGCGCCGCCACCGGGTAT 2461 36 100.0 39 .................................... ACTGGCTGTTCGGGATCGATATCGCCGGCTGGCTCCAGT 2386 36 100.0 37 .................................... AGTTCAGCCGCCGTGGCTTCTCCAGACCTGATACGAG 2313 36 100.0 39 .................................... TCCCACAGCAGCAGCGCCATGGCGAGGCGGGGGCGGCGG 2238 36 100.0 37 .................................... GTGGGCAATCCAGATTTTCCAGATCGCCCGGGTTGAC 2165 36 100.0 38 .................................... GTGGGTTGTTGGTTGGCAGGATACCCGATTTGTATCAC 2091 36 100.0 37 .................................... CCCGGAGGCTTGGTGGGCATCCACATGGGGCGGCGCG 2018 36 100.0 38 .................................... GGCGGCTACACGCGCGGCTGGGTGGCGGTGGGCACGGT 1944 36 100.0 37 .................................... CGGGATTGGCGCCGCCGAGCTGGCGTGGGGTCGGCTG 1871 36 100.0 36 .................................... GGAATCTGAGAGAGGAGATCGCCCGTGCGCGAGAAG 1799 36 100.0 39 .................................... TCAGCTTTGTCGGTGACGGGGCTGTTTCCTGGGAGGAGG 1724 36 100.0 39 .................................... CCCAGTAGCTCGGCTGCGGTGAACGTCGCCGCCGCCGAG 1649 36 100.0 38 .................................... GCCCGTAAGTTTGCTGCTCTCGGCCGGGAGTCCGAGGT 1575 36 100.0 40 .................................... GAGGTGCCGACCCGCTCGGCCAGCGCCTCCTGGGAGAGGC 1499 36 97.2 40 ...................................G CGCGCGCATGCCGGCGAGGATGACACGCGGGGCGCGCAGC 1423 36 94.4 41 ...........................G.......G ACTTTGGCTCGGTTTCCCGCCGAGCCGGGTCTGCCACAGGC 1346 36 100.0 40 .................................... CCCTGGCGCTGCGCCCGGAAGGCGCGCCGGAGGTTCCGGC 1270 36 100.0 38 .................................... ACTGATTAGTCTTGTGACTGAACGCGCTCTTTTCGGAC 1196 36 100.0 38 .................................... GGGCTGGCGCTGCTGTGGGCCGACGCGCGGGACCACCG 1122 36 100.0 39 .................................... GTCCACCCGGTCGGGCCGCGGGGTGTTCGGGTCCGTCAG 1047 36 100.0 37 .................................... TTCGAGGTGGCCGCCTTCGGCGCCGAGATGGCCGGCC 974 36 100.0 38 .................................... GGATCGGGGGGCGTCGGCCAGTCGCGGGGCCGACGCGG 900 36 100.0 37 .................................... GGGCCTGGCTGGCCGGCCTGGACGTCATGCTGGTCGA 827 36 100.0 38 .................................... TTCAGGCTCTGGCGCATCTCCCGGGTGGTCTGCTGGAC 753 36 100.0 40 .................................... GACGCCTCCCGCGTCGACGCACTTGACCAGATACGTGCCG 677 36 100.0 36 .................................... CGTCGTATCGGCCGTCCAGCCGGTCGTGTCCAGGGA 605 36 100.0 37 .................................... GGGTTGATCGGCTCGGTGGTGGGCCTCGGGGGCAAAT 532 36 100.0 41 .................................... CCGCCCTTCGGGCCGTGGTTACGGCGCTTCGGGCCGGGGTT 455 36 100.0 36 .................................... ATGTGCCACATTTGGTGCTCTCGCACCCACTCCCAC 383 36 100.0 38 .................................... TAAATGTCATAGTGAAGTTCTGCCCCCCGATTGAAGGC 309 36 100.0 39 .................................... GGAGGGTGATCGATGCGCTGGCGTGAGGAGCGGATCGGC 234 36 100.0 37 .................................... CCCTGGCCGAGGCGCGGCCTCGGACAGCAGGGCGAGG 161 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 55 36 99.8 38 CTCCCCGGGGCCCAAAAGCCCCGGCCTCATTGAAGC # Left flank : GCCTACGACATCGCCGACCCGAAGCGCTGGCGCCGGGTGTTCAAGGTGATGAACGGCTACGGCGAGTGGCTTCAGTTGTCGCTGTTCCAGTGCCGGCTGTCGCGCAAGCGACTGGTCCAGATGCGCGGCGCCCTGAACGAGGCGATCCTGGAGGGCGCCGACCACGTGCTGATCGTCGACCTGGGGCCGGCCGACGGGGTCCGCCCCCGCCTGGAAAGCCTGGGCAAGACCATCGAGGTGGTGGAGCGCAAACCGATCATCATATAGGCTGCAATGATCCGTGGGTGTCGGGCCGGCCCGCCGACCCGCCGCGAGCGCTGTGGAGACGCGGCCGACTCGGGGAGCGCTCGCGAATGCTTTTTAACACAGTGAATCAAAGGGTTGTGGCTTGAGAAACGACGCCGTTCGGGGGCCTGGAGGCTCTCGTTACGAGCCTGTCTTGTCAGGGCTCGAAAATGGTGGGAAATTTGCTTGCTTATCAAGCCCCTGCCACAGGGGCT # Right flank : CGCGCTGCTAACGGTGCTTGCCGTGCTCAGCCTAGGTTCTGGACTCATAATCCCGCATCCAGAGTCGTGTTGAAGCCAACATGACAGCGGCCAAGAAGTTCTGTGCCGACTTTTCGAAGCGGGTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCGGGGCCCAAAAGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 43356-42601 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCV01000013.1 Roseospirillum parvum strain 930I, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 43355 37 100.0 38 ..................................... GGAACGGGACGGGGTCCGGGATGGGGATGGGGTCCGGG 43280 37 100.0 35 ..................................... CACCACCTCTTGTGGCGGGCGGTTAGAGTAACAAA 43208 37 100.0 34 ..................................... TCCTCCTAAAACAAGGGGAAGAGGAAAGAAAAGA 43137 37 100.0 33 ..................................... TTCATCGCGATCTCCTTCTCCAGAGCGGGCCGA 43067 37 100.0 35 ..................................... ACCGTTCTCCATCTTGGGGTAGTCAGCAGCCGCAA 42995 37 100.0 36 ..................................... TTCGGCATCCGAACCTGCCCGGTAATCCGGGCTTCC 42922 37 100.0 32 ..................................... GGCGATGGAGATGATCTCCTCCGTATTCTTGT 42853 37 100.0 38 ..................................... GGTGGTACACCGGCACCTCCGATGTCTGGAGAACCCAG 42778 37 100.0 36 ..................................... CGCGCCTCCAGAAAGAGGGGGGTGGAAAAAGGGTTA 42705 37 100.0 31 ..................................... CGGACGTCAAACTCGTTCTCCTGGCACTCGT 42637 37 83.8 0 ................T..............GCC.GG | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.5 35 GATCAGCACTCATCCGCGCTCTCGAGCGGACTGAGAC # Left flank : TCAGCCACTGGGCGACCGCCGTCTGGGCCACCCGGTCGCGCACACAGGGCACGCTGAGCCGCCGAATTCCGCCCGAGGGCTTGGCGATATCCACATGGCGCACCGGCCCCGGACGGTAGCGCCCCCGCCTGATCTCGTCGGACAGGCTGGCCAGGCGCCCTTGAAGGCCGCTTTCGAACTGCCCCAGGGTCTGCCCGTCGCCCCCCGGACCGCCGCCGTTGGCCTTGACCTTGTCCCAGGCCGTGGCCAGAACGGGTACCTCGGTCAGGCGTTGAAAGACCGACATGGCGGGCTCCCGAGAGGAGGGTTTTATCTATGTCATACACTCAAAGATCGGCCTGTGCGAACCGTCTGGAATTCAAGGAGTATTGATAATAAATGAAAAATTCCCTTTCCGCCATGCTTTTGCCATAATTCGATCCGCCCTGTCGCCAAGAGGGTGCCTCCATCTGGAATGAGCGCCAAAATTTTCAGCTTGACCAAGGTGTTCCAGAGAGTAA # Right flank : TTGATCGCGGACACAAAAAAAGGGAGCCATCGGCTCCCTTTTTTTGTGTCCGCCAGGGAAATCGTTCCCGAAAGGCCGCTCCGTCAGCCCACCGGCGATACCCGATAGCGTCCCTGGCCCAGGGCGGCGTGGCTGCCCACGTGGGTCCACTGGCCGAGCACCAGCAGGGGGAGCAGCGGCGCCGGCGGCGGGCCCAGCAACAGGCTTCCCACCCGCCCCTCCACCGGCACCGGCCGGGGCTGGCGCACGCTGCCGCGCCAACCCCGCCAGGGCTGAAGCCCCCGCTCGTCGCGCTCAAGGTCGCTCTCCAGCCGCTTCAGCGCCGCGGCCTCCACCGTCAGCCGCACCCCCATCCACGGGGCCAGGGATTGCAGACGATCGGCCAGCCGCAGGGGCAGACCGGCCAGGGTGGGGTGGGCCCGCTGGCCGGCGCGGAACACCACCGGGGTCTGAAAGACCACCAGCGCCGGCACCCCGGGCGGCCAGTCGAGGTCGGGCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCAGCACTCATCCGCGCTCTCGAGCGGACTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 46591-46041 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCV01000013.1 Roseospirillum parvum strain 930I, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 46590 37 100.0 40 ..................................... GATGCCTGGCGAGCTCTTTCAGGAAGGGCGGCGCGCCCTG 46513 37 100.0 40 ..................................... CCAGGATTACGGTGGGGTCAGGGTTGGATTTTCGTTCCAG 46436 37 100.0 40 ..................................... GCCGGTCCTTTCGAACCTTTCCTCCTCGACCGCCCCCGAA 46359 37 100.0 34 ..................................... TTTCAACTTCCCCTCAGGAAGACGCTTGAATTCG 46288 37 100.0 35 ..................................... CCTTCTCCTCCCGTCAGGGAGGCGTTTTCGAAGGC 46216 37 100.0 31 ..................................... GAAAAGGGACCCCTCCCCGGAGGGATCCAGG 46148 37 100.0 34 ..................................... TGCTCCTCAGCGGAGGGGATCTCCATCTGGGCGA 46077 37 89.2 0 .............................G...GGG. | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.7 36 GATGGCCGCCATTCCGCGCTCTCGAGCGGACTGAAAC # Left flank : TCGGGACCTCCCGTTCGACGAACCGTGATCGACCATAGGCCCCCGGCCCCCGCCCCTGCAACCGTCGAGAGCCGGGGGGTGACGCCACCGCCCGAGGAAGGCGGCAGGGCGTCGCGCCCCCCCCGGAGGTGCGGGTCTGCGTCCCCGGGGCGCGCCTTGACGGGGCGCCCCGCCGAGGCCATCTCGACTCCTCCGTCTGCCGTTGGGCGGGGCCCGAACGGCCCCGGCCCGATGCCTTTGGGGGCATGCGTACGGGCGCTGTCCGTCGCCCGTTGTTCCGGGCGGCAGACACACGTAAAAGTGTATTCATCGGCCATTAAGCACGCGCATAAGGGCACATGTGCGAACCGTGTGGAATTTCGTCACCCTTGAATATAAAAGGGAATCATGGACTCCGCCATGTTTCTGCCACATTCTGAACCCAACTCGCGCTTTGATTGCGCAACCATCTGGAATGGCGCGGAAATTTTTCTTCTTGACCAAGCACTTCCAGAGAGTAA # Right flank : GCGTCGGTGGCCAGGGCCGGGGTCAACGCCGCCCGGGCCGGCAAACACCGTCGTGCACGGCCTTCCAGAACACGAGAAAAGGGGGCCGCGAGGCCCCCTTTGCGGGTCTGCTTGATTTCCCTTAACGCCCCCCCCCCGGCGCGGCGCCGTTCAGACCATCAGGTGGCCGTCCCGGGGCAGCAGCGGCGGCGGGCCGTAGGCCCGGCTGCGGCGCAATCCTTCCGCCCCCACCGCATAGACCCTGAGGCTGTCGCCGTCCTCCAGATGGCGGGCCACCACCCGGGCCACGCGGGCCGCCTCGGGGGCGCTCATCCAGGCCTCGAAAACGCTTCCCTGGACCCGGACCGCCGCGTCCTCCAGCACCGAGGCGACCCGCCGGCGCACCCCATCGTCGCTCACGTCGTAGCAGAACACGGTCAGCATGCGGCTTTCGGCCATGGCGGGCACTCCCGGGGCGACGCGCTCTAAACCTTGAATCGACAGCAGATCGCGCGAAATCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGGCCGCCATTCCGCGCTCTCGAGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //