Array 1 49933-50547 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYGI01000021.1 Listeria monocytogenes strain CFSAN049280 CFSAN049280_contig_0000021, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
     49933	    29	 100.0	    37	.............................	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC	
     49999	    29	 100.0	    36	.............................	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 	
     50064	    29	 100.0	    36	.............................	TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 	
     50129	    29	 100.0	    36	.............................	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 	
     50194	    29	 100.0	    36	.............................	AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 	
     50259	    29	 100.0	    37	.............................	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC	
     50325	    29	 100.0	    35	.............................	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT  	
     50389	    29	 100.0	    36	.............................	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 	
     50454	    29	 100.0	    36	.............................	GTCCACATCGACAATAAAAAACACATTGTATCACTT 	
     50519	    29	 100.0	     0	.............................	|                                    	
==========	======	======	======	=============================	=====================================	==================
        10	    29	 100.0	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                     	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG
# Right flank :  GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTTGTTTTAACTACTTATTAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//