Array 1 1155460-1155172 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYR01000001.1 Listeria innocua strain Lin13-012 Listeria_innocua_Lin13_012_Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1155459 29 96.6 36 .........G................... GTTGTTTCACTTCCATCGCTTACACGTCCGACTTTC 1155394 29 100.0 36 ............................. ATACCTTATGCAACTTTAAGCAACCGTGATTGGAGT 1155329 29 96.6 36 ......A...................... ATTCCTGACTTATTTAAAAGTAATACTTGTTGCATC 1155264 29 96.6 35 ...............C............. TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 1155200 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 93.8 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGGGAATCGACAGAAAGTTGTAAGTAGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGGATTTTAGATGTTTTTTGTTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTA # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6662-5375 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYR01000003.1 Listeria innocua strain Lin13-012 Listeria_innocua_Lin13_012_Contig03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6661 36 100.0 30 .................................... AAACTGTGTGAGCAAAGAGAACAGAGCCGC 6595 36 100.0 30 .................................... AAAAGAATAAAAAGAATAACTACGGAGAAT 6529 36 100.0 30 .................................... AATCATTGTTAAATTTGCTTTAGATTATCT 6463 36 100.0 30 .................................... TATCGAGTTGGGTACTTTGAAAATGGCGTA 6397 36 100.0 30 .................................... AATTTAGTTCCGTGGAATAACAACTCGAGG 6331 36 100.0 30 .................................... AAACTGTGTGAGCAAAGAGAACAGAGCCGC 6265 36 100.0 30 .................................... AAAAGAATAAAAAGAATAACTACGGAGAAT 6199 36 100.0 30 .................................... AATCATTGTTAAATTTGCTTTAGATTATCT 6133 36 100.0 30 .................................... TATCGAGTTGGGTACTTTGAAAATGGCGTA 6067 36 100.0 30 .................................... CTTTACCAATTTCGTCGTATTCTTTGTGAT 6001 36 100.0 29 .................................... AGCTTAGACATGTATTTAGCCGTAACCTT 5936 36 100.0 30 .................................... AAAAATAACAAGCTTGTTGACTTTAAGAAG 5870 36 100.0 30 .................................... AAATCACCTTCGTTTGTTTCTGTGCTATCG 5804 36 100.0 29 .................................... TAATAGCATTGCTTTGCGTCATCCCTTCA 5739 36 100.0 30 .................................... GCAAACACAACGCGATTTTGTTCGACGATA 5673 36 100.0 30 .................................... TCCTAATCGGTAATTTTATATTTGCGTATT 5607 36 100.0 30 .................................... CCAGCTCAAGCCCTCGGCGCTTACGAACCA 5541 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 5475 36 100.0 30 .................................... GGTTTATATTTGGTATAGTGAAAAATAAAA 5409 35 86.1 0 ..............C......T...A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAGAAAAATTCTACGAG # Right flank : CATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAGGTTTAAAAATACTACACGATTACATTAAAAAAGCTAGTAAAGAAAGTGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //