Array 1 289799-289110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTI010000019.1 Pectobacterium quasiaquaticum strain A411-S4-F17 P._quasiaquaticum_A411-S4-F17_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289798 28 100.0 32 ............................ TCAGAGGTGCGCTGGGCGCGTCTCATGCGTTA 289738 28 100.0 32 ............................ ATTAACGACGCGGATATGGCGGTATTGTGGCC 289678 28 100.0 32 ............................ TAAGATTAATTTATTCTCGTCGCTCAATGGAG 289618 28 100.0 32 ............................ TAAAAAGCGACAAAACCCAGAGGACGATTACG 289558 28 100.0 33 ............................ GCAATCGCCAAAACAAATGCCCAGCAAACTGAT 289497 28 100.0 32 ............................ AGCATCAATGGAGAGAATGAAAGCCACTGATT 289437 28 100.0 32 ............................ GCTATTTTTTCCAGCCTTTCTTTGCTTAAATC 289377 28 100.0 32 ............................ GATAAACCAATTGCTGATTTTTTTCATGATAG 289317 28 96.4 32 ...........T................ ATGTAGCTCATCCCGTCGTTGAACAGGTTCAT 289257 28 96.4 32 .................T.......... CATTGCGTAGTGCCAAGGACAACGACGCACCG 289197 28 92.9 32 .............C......A....... ATAAAAAAGCCCGCAGCGATTATCAGCGGGCT 289137 28 78.6 0 ...........TGC.........G.T.C | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACGCTAGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAGAGCCTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGTCCGCTACAGGATGCTCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTCTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTAGTTAGCGTAAAAACCTAACTA # Right flank : TATCGGAATGCGTCGCTAGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGTATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGACATGTCGTCGTTGCCTTCATAGGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 298374-299543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTI010000019.1 Pectobacterium quasiaquaticum strain A411-S4-F17 P._quasiaquaticum_A411-S4-F17_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 298374 28 100.0 32 ............................ AGCGCAGGCCCGACGATGGGGATAGTAGCAAA 298434 28 100.0 33 ............................ AGTGCTTATGCCAGCAAATCCACTATTCATGAA 298495 28 100.0 32 ............................ CTGAACTTGAAACTATTCAGCGTGATGGTATC 298555 28 100.0 33 ............................ CTACGCCGATTATGTCTGGTGTTCGTACTCCAA 298616 28 100.0 32 ............................ AGAAGATTTGACTACATTCATAATACGCCTTT 298676 28 100.0 32 ............................ AGAAGATAAACGAATCTTCCGCACAACCAATT 298736 28 100.0 32 ............................ AAGACTAGAAGACGATGGAGCGGATAAACCAG 298796 28 100.0 32 ............................ TTTAAATCCATCTGAACTTGGTCAGGGTCATC 298856 28 100.0 32 ............................ AGCAACGTGGCGTCTTCCGTGTGATCGGTAAT 298916 28 100.0 32 ............................ ATCTTGAACATCAAGCTGGTTGTTTTTCATAC 298976 28 100.0 32 ............................ GTCACCAAACTGAACTTTACGAACCGTTTCTT 299036 28 100.0 32 ............................ AACTGTTTCTATCGAGCAATTTGCGCATGAAT 299096 28 100.0 32 ............................ CATGCCAGCTTGTCCCTGAGCGTTGCCACATC 299156 28 92.9 32 ...........T.T.............. TGCTAGGTACTCGTATTGTGTCAATATCATCA 299216 28 92.9 32 ...........T.T.............. AAGCCGAACAAAGCAGCGTGTTACTGCGAGAA 299276 28 89.3 32 .........T.T.T.............. TAAATCCGCATCCGCAATGTCCGACACAAGCA 299336 28 92.9 32 ...........T.T.............. AGAGACGATCCGCAGCAAAATAATGACGGGCC 299396 28 96.4 32 ...........A................ ATGTTGGCGCTTGAGGAGAAACTCAATGAGGC 299456 28 92.9 32 ...........T.T.............. TTTTCGATTATGAATTTCAACAGGAACCCATT 299516 28 92.9 0 ...........T.T.............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGGAATGAGTCGCAGGCTAACTATTTGATAAAGAAAAAATATAATTTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGTTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : AAGCGTGAATCATTACCGCGTCAATAGATCCTAACCCGCATTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGATCCATATGGCAGCAGAGTTGGTAGAAGGCCTTGTTGTGATCTTTTTCTTTGAGGTGAGCGAGTTCGTGTATCACGATCATCCGCAGGAAATCTTCTGGCCCGTCACGGAACAGCATCGCTATTCTGATTTCGTTATTGGACTTTAATTTTCCGCCCTGCACACGCGCCACAAACGTATTGGTTCCTAGCGTCCCTTTTATCGGGTTCTGTTTATTGTCGTAAAGCACCTTTGATATTGCCGGGGCGTTTTTCAGATAGCGCTGTTTCAGCTCGGTGACAAACTGATAGAGTGACTTATCACTCTGGATCGGATGACGGTCAGGGTATCTTTTTTCCAGCCAGAGGCCGAGTTTGCCTTGATCGAGGAGCGTTTGTACTTGGGCAACAATCGTTGGGGGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 303488-302858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTI010000019.1 Pectobacterium quasiaquaticum strain A411-S4-F17 P._quasiaquaticum_A411-S4-F17_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 303487 28 100.0 32 ............................ TGCCAGAAGCGCACAACATCAGTAAGAAGCAA 303427 28 100.0 33 ............................ CGCGAGGCAGGTTAAACTAGAATCAATGCCTGA 303366 28 100.0 32 ............................ GGTCTACGAAGGCCCACTGAGCGAAATTATAC 303306 28 100.0 32 ............................ TTCGCTGTAATAACTTGTCCCTCCAGGGCTTA 303246 28 100.0 32 ............................ TGTCAAGCCTATCAATGAGCATGCCGTTGGGT 303186 28 100.0 33 ............................ ATAAACGGTGGTATGCCGCGCCGCGCTCAAGTG 303125 28 100.0 33 ............................ ATCCAGACTATCCAGCAATGCTAAATTACACAT 303064 28 100.0 32 ............................ GCGATACGATCATTTGTCAGGCCAAGCGCCTT 303004 28 100.0 32 ............................ TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 302944 28 92.9 32 ...........C.C.............. GTTGCATTTCAGCCAACCAGACGGGGCGACGG 302884 27 85.7 0 .........-...C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACATAAATTCAGCCAGAGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACCAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTAGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //