Array 1 78950-79796 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKR01000003.1 Porphyromonas cangingivalis JCM 15983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 78950 37 100.0 35 ..................................... AACTCCTTGCTACCTCTTAGGACGGTGATATGAGT 79022 37 100.0 39 ..................................... TGCTCTTAGCTTGTAGAAAAGTGCAAAAGATAGGATGCT 79098 37 100.0 36 ..................................... AGCAGACGTTTCTTTTTCTCCTCAATCGAGGTAGAT 79171 37 97.3 36 ..........................G.......... GCCGTCGGGCTTATATATCTGCATATTGTCTTATAT 79244 37 100.0 36 ..................................... CGTATTTCGAGCTTCATTCGATTGGTTTTCGATTAT 79317 37 100.0 37 ..................................... TTCAGAGCCATCGCTGTTAGTCCGCTCCCCATTTGAG 79391 37 100.0 38 ..................................... ATTTGAGTATGTAAAGTATCATGGATTTAGTTTTCTTT 79466 37 100.0 36 ..................................... ATCATTAAAGTGTTTTCTAAACCCATCTTCTTCGGT 79539 37 100.0 36 ..................................... CCCGACCCAGCTCCGTGTCCAGCTTGTAATGTTCAA 79612 37 97.3 36 ............G........................ CCCGACCCAGCTCCGTGTCCAGCTTGTAATGTCCAA 79685 37 94.6 38 ............G.......................T CTCTATCGAGGTGGCTCTGTAATGCTCTCCCTTGTGAT 79760 37 78.4 0 AC.CT......................AC..C...G. | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 97.3 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : GATTCGTTTTCGACCTTCCTACGACTTTATTTTGCCCCTCTTTACACGTGGCTCAGGGGGCGAATGAAGCTACTCGGATGTGACCCGAAATCCTGAATCTGTTTTCGAAACTTTTTTGATGGTCGCGATTTTCTTTTCCTTTTGAATATCAGATCATTGTGTTTTTTAGATGTGAGGTGAGATTTTCGAAAATACTTGCGGATGCTCTTATCTTCACTCTATTTTCGAAGAAATGCTGTTTTTGTTCATTCTAATCTCCTGATTATCAGTGGTGCTCTGCTGTCAATCTTCGAAAATTGAAAATCGTGAAAATTCCTCTCCGAATTTTCGAAAAATGAAATTCTTTATATATCTTTGTCTCGCAGTGGATTAAATAGAGGTTGTGACCACATGATGTTCACGTAGGAGCATCTCCGAATAGCGATTTTCGAAGAAATAATGACTGCTGATTTTCAGCGTGTTAAGAAAAGGTTTCTATTCAAGTTGCTGATAATCAATCT # Right flank : CTTTTGAATTATTTGTCGTATCTTTGCAGTGAAGAGGTGTGAGCCTCTCCGGTGAGATGTCCGTAAGACATCGCGCCCCAGAGGAGATGAGAAGTTGTCTCCTCTTACTTATTTATATCCACTCATTGATCGAGATCATGGGGGACACTGCTTATAGCATGGTTATAAGATAGGGCGTTGCCCTTTTTCGAAATATGATCGGAAGAAGACAAACAAGACCGCCCCCGAAAAGTCGAATGAGACTTTTCGGGGGCGGTCTTGTTTGTCTGGTGTGCCGTATGGCCGTCTTAGGGTGTGGTCACACTTCGGGCTCGATGTTGCCCGAAGCGACATAGGTGCGCCATTTCTCGATCAAGGCTACCATGTCGGAAGGAAGGGGGGCTTCGAAGGTCATTTCTTCCTTCAATATGGGGTGATAGAAGCCGAGGGTCTTGGCGTGGAGGGCTTGTCGGGGGCAGAGGGCGAAGCTGTTTTCGACAAACTTCGTGTACTTGCTGAAG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 22740-20759 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKR01000007.1 Porphyromonas cangingivalis JCM 15983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 22739 33 100.0 34 ................................. CTCATCGAAGTCATGCAACTGCACGTACTCGGAG 22672 33 100.0 34 ................................. TAGTGTTCTTTGTTGTCATAAATATTAGATGGTT 22605 33 100.0 35 ................................. CAATCGAGCGTTTGTTGACCTAAAGCATATTCGAT 22537 33 100.0 35 ................................. TCGAATATATCGAACTATTTCAGGGTATTCCAAAA 22469 33 100.0 35 ................................. ATCGTCGTTAGCCAAGCTCGTGGTCGTAAGCCCGG 22401 33 100.0 35 ................................. CGTTATTTATGTCCGTTAAACTTCCTTGTTGCTTC 22333 33 100.0 33 ................................. GGCAATCATGGAGCCACTTAAGTACATGGATAT 22267 33 100.0 35 ................................. TTCAGCTCTGCGATAGCCGTCTCCGAGAGATCGCT 22199 33 100.0 33 ................................. ATCTCGCAAGAATATAAGGGTGAGCCGATGGGG 22133 33 100.0 37 ................................. GACCTCCACATCTCGGATGCAGTACTCACCAAACAGT 22063 33 100.0 34 ................................. AACGAGGAGGCTCTTGAAGTCTTCGACCTATGCG 21996 33 100.0 34 ................................. GTTTTTGGCATTTTGCAAGAGATATTAGACAAGA 21929 33 100.0 34 ................................. AAGGTCAAGAGATGAAATTTTGTCATCGTCATAA 21862 33 100.0 35 ................................. AATTTGAGCAGTACCTCGAACAAAACGATCATCTT 21794 33 100.0 34 ................................. TCTTTAAGCTCATCAAATTGCTCATCAAAACTCA 21727 33 100.0 34 ................................. ATATCGACCTTGATAAGCCCAAGCAGAGTCAGAA 21660 33 100.0 34 ................................. ACACGAGGTCGAAACAAGGGAGATTTGTCGCTGA 21593 33 100.0 34 ................................. CTTGTCGCCCTCCATACGGTTCAGGAGAGCATAG 21526 33 100.0 36 ................................. CTGAAGGTTGGGCGTATCGTGCCATCATCCAAGGGG 21457 33 100.0 34 ................................. GCGGATCTTGCTCAAGTAGGTGTCAAGGGCATAG 21390 33 100.0 34 ................................. AAACCGCCCCTTTGCCGGGGCAAAAGTGGTACAA 21323 33 100.0 35 ................................. GGCGGACAAGGCCATGGGGTATCTTGCGGACTACC 21255 33 100.0 33 ................................. GGGTATCCTTTTTCGTTGCTGAGACACTTGATT 21189 33 100.0 33 ................................. AAGAGCAGGCTTTGACGGAACAGAAACGACGTG 21123 33 100.0 33 ................................. TTGTCTCGGATGAGGCTACAGAAGTACTCGAAA 21057 33 97.0 33 ...................A............. ATATTGAGGAAATTTGTCCATAGTCTATAATCA 20991 33 100.0 34 ................................. TTACAAAAAAAAATAAATATGAAAATAACTATAA 20924 33 100.0 34 ................................. GATCGAGTCGGAGCGATGGGATGAACTTGAGGAC 20857 33 100.0 33 ................................. GTAGGATGGGAATATATAAAACTTTTATTCACG 20791 33 97.0 0 .........................G....... | ========== ====== ====== ====== ================================= ===================================== ================== 30 33 99.8 34 GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Left flank : CGGTCTTCGAGTGCCTCGTAGATCCGGCTCAGTTTGCTGTTCTCAAACACCAACTCCTCGACACCATCGATGATGAAGAGGACAGTCTCCGCATCTATCAACTTGGAAAGAACTACCGCTCACATATAGAGATCTACGGCCGTGCCACATCCTTCGAGATAGAGGGAGAGCTCATCATATAGCCTCGTACGTCTCCTACGCTCCCCTTAAGATAAACCTCCAACGGTAGTAAATACATAACAACAAGAGGAATCCCTCAGCATACAGACATATCTTCAGTCTCAACAATCAGATCACCCCACACAAACAAACCAACAACAAAAAGTTCTCATCTGCGAACCAATAGTGCACAGCAAAAAGCAGGCAAATTCGCACCCACAGATAATCAGGGTCTTAAATTGCTTGTGCATTGTATTTAATCCACTATCGACTTCAACGAAAAGCCTCTCGCAAATCAAGCCTTCAGAACCGATATAAAATCTATATCTTTGTGGCATACT # Right flank : AAAGTTTTATCGAAAAGGGATAAGTTGATACTATGTCGCGGTCCGAATGGACTGCGACATAGTATTCTTTTATCTAAAATGCTGAAGCTCGGCGTTGAGAGATCGAACCATAATCTTGTATGACATTCGTCCGAATACAGTAAGATGCCTCGAAGGATATCTTGAAAGAGTCCGCATACACAATGAATGACTTTCAGGGGAGTGCCAAGACTTTTGTCTTCGCACTCCCCTGAAGCTGTTTAGAGAGATGGTTGTCAAGAGAAGAACCGTCAGCTAATTTGCCCCTCCAGCATCTTGAGATAAGTAGGTGATGAAGAGCAGAGCTGATCGTCTGTTCCGACAGCTTCGATGCGGCCGTTATTGAGGAGTATGATCTTGTCCGCACTGCGGATTGTCCTCATACGATGGGCAATGACGATGACGGTCTTGTTGCGGATCAGTTCCGAGAGAGCATCCTGGATGAGGGTTTCGTTCTCCACATCGAGGGATGCCGTAGCTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 36396-37679 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKR01000001.1 Porphyromonas cangingivalis JCM 15983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 36396 36 97.3 37 ....................-................ CTTCTTCCTCCGCCTGCGTGGATTTTAGATTGCTTCG 36469 36 97.3 38 ....................-................ CTTGGCTTGTGCCGTTGTTATGCGTAAGGCAACGGCCA 36543 37 100.0 39 ..................................... AAAACTCTAAACGTAATTACGGCAATCGTAATATAGTCC 36619 37 100.0 38 ..................................... AAGTAACGGAATAATCCCCCAATCGGTCAACCTAATGA 36694 37 100.0 36 ..................................... TCTTTCCCAAAAGAATTTGAAACAAGAGACTCTAGA 36767 37 100.0 38 ..................................... TCGTATATTATTAGTGCGGAGTAGTTGGTCACTATGGG 36842 37 97.3 36 ............G........................ CGAAATGCTCCTTGCCCTATGATAATGCTTTCTGCT 36915 37 100.0 39 ..................................... TCCGCTATGTTTACCATTTTCATCATCCCAGCATAGAAC 36991 37 100.0 37 ..................................... TCATATTGTTGCATAAATTGTTTAATAGACTTAAACT 37065 37 97.3 36 .......................G............. TTTATAGGAGTTCTCTATTGATCTTGTCGACTCGTT 37138 36 97.3 35 ....................-................ TCAGCTACGAGATACCACCCACCCTTTCGACCTTC 37209 37 97.3 35 ....A................................ TTGTTGATTGTAGACCATTTAGCCAATTCAGGAAA 37281 37 100.0 34 ..................................... GTGATCACAGTCCATAGTCGCCTGTCGTATCGTG 37352 37 97.3 35 .......C............................. GCTTCCGAGGATAGGAAGTTCTCCTTTACTTCTTG 37424 37 97.3 36 .......C............................. CCTGCCAGGGCTGTCGAGGTCATACCCAGCTCTTCT 37497 37 100.0 35 ..................................... CGCAGTGCCCGACACGATATTGATGCTCAACTGTG 37569 37 97.3 37 ...................................G. CGATAGCGGTATCTCCAAAATGTCTCAGCCCCGAACC 37643 37 83.8 0 ...........................TGGC..C.G. | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.7 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : CGATGAAGCCATCTTAGGCACAGGGTATCCCTCTCTTGTGTCTGTACCCTACTAAGCGACCCGACATTCATCACCTTTGTTTGCTCTTGGAGTGGATTTCATTTTCGAAAAAAATGACTGTGTTGAGATTCACTTTTTGCTGTCTATCAGGATGTTATCGAAAATATAGTTTTGTGTCTATTTTCGAAAATCGCAGCAGTCGAACTGATAGAGGATCGATTTTCGAAGAAATGCGACTTTGTCGATTTGTAACCGCCTGATAATCAATAGTACATAATGAGCGTTTTTCGAAAATCGAAATAATTGATTTTTATTGTTTTGGTTTTTCGAAAAAATCAAAATCTTTATATATCTTTGCCGTACAGCAATTTGAGGGCTGCTTTTGGCCTCAAAGTGTTCATGCAGATACATTCAAAGAGGGCGATTTTCGAAGAAATAATCACTGCTGATTATCAACTAATTACAAAAGAGGTCTTCAGTAAGTTTCTGAAAATCAATCT # Right flank : CATAGCGATGAAGCTCGATTGATCAATATATACTTGAATAGATAGGGAGAGTCACTAAAAAAGTCGTTAAAGGCGATGAATCGTCTTTAACGACTTTCGTTATCAAGTCTAACGACTTTTTTTGTCGCTTCCTATGATCTTTTTCTCGTCAAGAGGGTCTGGTCTCGATATGGCTGTCTATCAGGTGTTTCTCGATGAATTGCTGTTGCTCTCCGTTGATTGTGCATTTGCACTCTTCGGGAAAGGTTGATGAGTCCGGATTGTGTCATTTTGTCTTATTGCATTTATTCTTCCAAAGACTCTGAAATGTCATTAAATATTTTTATCTTTGTTTAACTCGCCTCGCCGGGTTTTATAGCCAAAGGCTCCTTGAAGAGGATGTCACTCCAAAGGGTTTCGGCAGGAGGGGAAGAAGGTGTCGCTCTCAGATTTATACTTATGAATAACAACAAGCCGTACAGCAGACATATCTTCATCTTCCCATTTCAATGGGACTATAT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 48711-49482 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKR01000001.1 Porphyromonas cangingivalis JCM 15983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 48711 37 100.0 34 ..................................... ACTGAGCAACAATGCTTGTCTGCAAAGTCGTTGG 48782 37 100.0 36 ..................................... TCTTTTTCCTCTCCCTTAGGACGAGTGCAAAGCTGA 48855 37 100.0 33 ..................................... CCTTTCCCTTTCCCTTTTTCTCATGAGGAAGGA 48925 37 100.0 40 ..................................... GCTATCATCTCTCGACTTTTTTGTAGGCCTTCTACAATTG 49002 37 100.0 38 ..................................... AAAGTGAACGTTGATTCCCCCTCCTTTAGGGACTTTGT 49077 37 100.0 34 ..................................... TATCATTGGGACGATCGGCATACCAAGATTCTAT 49148 37 100.0 39 ..................................... TCCAAGAGTAGTGGAAGAAGGAAGAGGTAATAAGTCCCC 49224 37 100.0 38 ..................................... TTTTTTCCTTTAAGGAAAGTGCCTTGTTCTAGATTCTT 49299 37 100.0 37 ..................................... TCAAAAGGAGGAGGAACTTGAGGAGCTTCTCCTAAAA 49373 37 100.0 35 ..................................... TGATACAGCCACTCGGAAGAGGTAAACAAATTTTT 49445 37 91.9 0 ........................G........G..T | A [49476] ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.3 36 GTATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Left flank : AAAAGGAGAACTAAAATCATATAGAGAGTATAGTATGCTCAAAAAAGCTCCCATTCCGTAAAATCTGACAACCTTACCGAAGAGGTCTCGATAACAAGAACATTTTCGAAAAAAACAACCTTGTCAAAAGTTGCTATACATCTATTGATGAGTTACTTATGGAAATGCTTAAATTTCTCTGTTTTCGAAAATCGCATCAAGCAGACTTCCCCGAACCCGATTTTCGAAAAAATAGACTTTTCTCAAAGTATAACCCGCTGATTATCAACTATCATTTTATCGATTTTTCGAAAATGTCATTTTGATGGATTTTTCCACATAGATTTTCGAAATTTCAACATAATTGTATATCTTTGTCTCTCAAGGAAGTACCCCTTGATCAAGTGAGGATAGTGTACACATAGAAACAGTTTAGAAGGGGGATTTTCGAAAAAACATAAATGATTCACAGAAAAGACTTTATAAAAAGAGTGTTTTCGTAAATCACTGGTAATCAAATT # Right flank : TGCAGGTTGAGCAGAGAGAGAGGGAAATATCTTTTCGAAATCGCTTATATCCATCGTTTTATTATTATTTTGTTTTATATTTGCGGTGTGGAGGAGCGAGACCTCTACGGTGAGATGTCCGCAAGGCATCGCGCCCCCTATCGGAGGAGATGAGTCATCATCTCCTCTTGTCATTTATGCCCACCCTTATTTTGTCGGTATCATACCGGAACAAAGGCTTTTTGTCTCTTATGACTGTTACGACTATCTATCCATATCCATCGTGAAGACAGTCAAGTCCTCGTATGTGCTTTCAGACGGTATCGGGAAGTAGAAAAAAAGTCGTTAAAGACGATCAATCGTCTTTAACGACTTTCGTCATCAAGTCTAACGACTTTTTTTTGTCGCGTCCTATGATCTTTTGTATTGGGGGGGGGAGGTGGAGGAGATGGGGGCGGAGGCTTGATTTTCGCAAGTCGGGTAGAAGTCGTATTTTTGTACCTATATTTATATTAGGTAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //