Array 1 3767784-3766962 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP054422.1 Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain 14-SA00836-0 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   3767783	    29	 100.0	    32	.............................	CGCGCCACGTGGCAACGTCATTAGCACAGAAG	
   3767722	    29	 100.0	    32	.............................	CGGGGTCAGCGTCTGGTGGGAGATAAAAAATG	
   3767661	    29	 100.0	    32	.............................	GGAGAAACACCCGCAGCACCACGGGCGATGCA	
   3767600	    29	 100.0	    32	.............................	ATTACAAATAATGCGACTATGTATGCAGAAAA	
   3767539	    29	 100.0	    32	.............................	GTGTCTGGAGATACCACCACGACGCATCGTTA	
   3767478	    29	 100.0	    32	.............................	GCGCGTTGATAGGTATTGTTCTGGGTATTGGT	
   3767417	    29	 100.0	    32	.............................	CCAGTGTAATTGTTGTCTGTGACATATAATCC	
   3767356	    29	 100.0	    32	.............................	TTTACCGCCGCTCAGCTTCGTACCCTGGTAGA	
   3767295	    29	 100.0	    32	.............................	GCTTACATTGAGATTCCTTTGTTTGTCGTGGG	
   3767234	    29	 100.0	    32	.............................	GTGGACGACCTTGAGCATTGATTTAGGTTACG	
   3767173	    29	 100.0	    32	.............................	ATGATTTTCTCCTCAATTACCCGCTATAATAC	
   3767112	    29	  96.6	    32	.............T...............	TTTGCGCTCGCTGACGTCAACAGCTTCTACGC	
   3767051	    29	  96.6	    32	............T................	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC	
   3766990	    29	  86.2	     0	............T............G.TA	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  98.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT
# Right flank :  TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGAACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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