Array 1 422560-424173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKL01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain F28C1 NODE_1_length_682581_cov_19.100515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 422560 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422621 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422682 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422743 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422804 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422865 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422926 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422987 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 423048 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423109 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423170 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423231 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423292 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423353 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423414 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423475 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423536 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423597 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423658 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423719 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423780 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423841 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423902 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423963 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 424024 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424085 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424146 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440306-440945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKL01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain F28C1 NODE_1_length_682581_cov_19.100515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440306 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440367 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 440428 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 440489 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 440550 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 440611 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 440672 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 440733 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 440794 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 440855 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 440916 29 96.6 0 A............................ | A [440942] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //