Array 1 17-776 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKH01000008.1 Bifidobacterium adolescentis strain AL46-2 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 100.0 34 .................................... TGCTGGTCATTGCTTTCCTTTGCTTGTTGACGTT 87 36 100.0 37 .................................... GCAAGCTCGACAACGTTTCGCTGCCGACGTTCCTCAA 160 36 100.0 38 .................................... GTCGGCTCACGAAATAAGTCTCGTCCTTGCCATCGCAG 234 36 100.0 39 .................................... ATAAATGCCGTTGAATTGCCCTTTAACGGTGCTGCCATA 309 36 100.0 34 .................................... CGAACATGAGATTATATGCCGCGATTATCGGAAC 379 36 100.0 34 .................................... CGGTGCCGATCGTTGAGACGGAATCGTAAGTGTT 449 36 100.0 38 .................................... GTACGTTTATAGTGCCTTTATATGCTTTGGTTGGATAT 523 36 100.0 36 .................................... ATCCACTGTGATACCGCCCATGCGCACCCGGAAACT 595 36 100.0 35 .................................... TCGCCACTCGCCGATTCCATTTGCAAGCCGAAGAC 666 36 100.0 39 .................................... CCCGCTCGACTCCGGGTCTAATCGGCCTGCGCCCTGCGA 741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 100.0 36 ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Left flank : ACGTGCATTACCACGCA # Right flank : TAGTCACACTATAAAACACTGCAATGACACGTATCTCAAAGCTTTTTGCGAGAGGTCCTTCCCCTTGTCCAGATTAGAGATACATCCCCAGAATGCCCTCACACATAAGGCCTATTGTTCTTAGGTGCGAGCGCTCACCGCGTGTCACAGAAACGATTCAGCACTCGCACCTAAAAACAAACACTCTTCACTTATCAAGCGACATAGCTATGTTGAGCTAAGAATCAAATCACCGTTGGTATGTCTAAATCCGTATACCCACGATGTCCCAAGAAATCCAATCCCTCTTCCGTCTGTGCAATCGTCCCCAAAGAACAGAACACAACGGAATCAGTTGAACCATCAATTTCCTGTTCAACTTGCATGCGAACATCAAGCATCATCGAAGGTCTGACGCGCAATAGAAACACGCTATATTGCAGACGCTCCCCATAATGCTGAAGAATCTTCGCGATATGTGAACGACGATAATCGTCGCTCACATCGTATGCGACTAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 418703-413594 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKH01000007.1 Bifidobacterium adolescentis strain AL46-2 Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 418702 36 100.0 34 .................................... AACACTTACGATTCCGTCTCAACGATCGGCACCG 418632 36 100.0 34 .................................... GTTCCGATAATCGCGGCATATAATCTCATGTTCG 418562 36 100.0 39 .................................... TATGGCAGCACCGTTAAAGGGCAATTCAACGGCATTTAT 418487 36 100.0 38 .................................... CTGCGATGGCAAGGACGAGACTTATTTCGTGAGCCGAC 418413 36 100.0 37 .................................... TTGAGGAACGTCGGCAGCGAAACGTTGTCGAGCTTGC 418340 36 100.0 34 .................................... AACGTCAACAAGCAAAGGAAAGCAATGACCAGCA 418270 36 100.0 35 .................................... GCGTGGTAATGCACGTGCCAGCCATTTACATCGGC 418199 36 100.0 39 .................................... TGCAAACACACCAAGGTGGCCGACCCGCGCTTCGTGCGC 418124 36 100.0 36 .................................... TGAACCCGTTGCGGACGGCCTCGCCCAAGGGCATGC 418052 36 100.0 37 .................................... CAGGTGTCGGCCACGGTCTTGCCGCTCCAGCCCTTGC 417979 36 100.0 36 .................................... TGCGTCAAGCTAACCCGGTGTCCTTGGAGATTCCGG 417907 36 100.0 38 .................................... GGTTGGATTGCTTGAGTGAGCGTGTCGGTGGCGGTGTT 417833 36 100.0 34 .................................... CCGCCTTCCGCGTCGAAAAAGGTGCTCGTGCAGC 417763 36 100.0 34 .................................... CTGGCGTTATCGTCCGGCCAGAAATCGGCTTGTG 417693 36 100.0 36 .................................... TTGTACGACGCTCTGCTACGAGGGCTTGACGCAAGC 417621 36 100.0 35 .................................... GGCAACCAACGTCTTGTGGAGGATTATGCGCCGAA 417550 36 100.0 35 .................................... ACCGTGGAACTCGGCGAAGAGGCCATACCGAAGCC 417479 36 100.0 36 .................................... CGTACCCCGTCGTGGCGTCGGCTCGGACAGCAAACG 417407 36 100.0 39 .................................... CGATGGCAACGCAAACGCGAACAGATCAAACAGGACGCA 417332 36 100.0 38 .................................... AAGGTGAACATGTACAGCATCCACGGTTATCGTTCCGG 417258 36 100.0 37 .................................... GCGTGCTTGTGCTTATCGTCGATACGTCCTCTCCCTC 417185 36 100.0 36 .................................... AAGGTTGCCGACTATGGCACCTCGAAGAAGACGCAG 417113 36 100.0 37 .................................... TCAATTCATCAAACAAGTCGTTTTTATCAGGCAGTGA 417040 36 100.0 39 .................................... TCGTATAAACGACCATGAAGGAAATTGGATATCATTGTT 416965 36 100.0 36 .................................... GGAGTCAGACAAGCAATGGTAGCACATTGGGAAGTG 416893 36 100.0 36 .................................... CACTACGCCCAAACCTATATAAGGAAGAAAGTTATA 416821 36 100.0 36 .................................... GGGTCGGGCATGTGCGGGTTGGACAGTTCGCAGGCC 416749 36 100.0 36 .................................... TCGAATAAATCCATGCGTCAGTACAAAGCCAACGAG 416677 36 100.0 39 .................................... GGAAAGGAACACGTTGAAACACGAATACACGGGCGACGA 416602 36 100.0 35 .................................... ACGGCGACCTCATGCCACGGCAAAACTGATTTTTA 416531 36 100.0 37 .................................... ATGCTGATGCAGCAAACCACTCCAGTGGACGATATTT 416458 36 100.0 34 .................................... GAGGCAATCTGGTAGTGCAGGTACTTCAGCTGCG 416388 36 100.0 38 .................................... TGTATTTTGGTTACGCCACTATAGCTTTCCCGCGCTCG 416314 36 100.0 38 .................................... GGAATAACAATGGCTACGAACGTGAGTGAAAAAGACAA 416240 36 100.0 36 .................................... CGCCGCAGCAGACCACGCAGGCCAACACGACCCGCG 416168 36 100.0 41 .................................... TATGCGGAAATGGAAGACAATCTGACCAAAGGTACGGCGGG 416091 36 100.0 35 .................................... TTCCAAGAATGGACGATCCTATATTCAGACCGATG 416020 36 100.0 38 .................................... AAAATGCAGTTCCGAGACGGCTTTCTAGACCGAACCAA 415946 36 100.0 34 .................................... CCGGTATTCGTCTCGCAATACACTGCCACACGGC 415876 36 100.0 35 .................................... ACTGCGACGTTGAACGGCCCGGCGAAATTCGACCA 415805 36 100.0 37 .................................... AGGCCGCAGTAACCAAAAAACTGGAAAGCCTGAAAAT 415732 36 100.0 37 .................................... TGTCCGCTCCACTGGCACGTCGAATGCCATGACTGCG 415659 36 100.0 37 .................................... ATGGAACTTGTGGAGGACAAGAGACTCCTTGCCTTAA 415586 36 97.2 36 .....................A.............. CCGCATCCCCGTACGTTGCCGGAAAGCCCAGACCGA 415514 36 100.0 38 .................................... ACGCCCGCCGACGACGAAACCAGCCACCTCGACCAGCT 415440 36 100.0 34 .................................... TGGGCGTGCTGGTTGATTTCGGACACGACGAAGG 415370 36 100.0 37 .................................... AACGATCTGGCGAAGCGAGTCAATGCTCTTGTGGCTG 415297 36 100.0 36 .................................... GCGACGGTGATGCCGTCCGGTCTGGTCGCGTCGGAT 415225 36 100.0 36 .................................... AAATGCGCGAAGCGTCGAAAAAATGCGCGTCGCTGT 415153 36 100.0 35 .................................... CCGCGATGTCGGACTTCGCCTGAGCGATTTCGTCG 415082 36 100.0 35 .................................... GCGCCGTTGCCCATCTCGATGCCCTGCAGGATGAA 415011 36 100.0 37 .................................... CCTTCGAGATCTCGCCATTCGCGGTGGTCAGGTCGCT 414938 36 100.0 35 .................................... GGTGGCGGATTCACCCAGCAAGGCGGAGCCAGCTA 414867 36 100.0 38 .................................... AAACGTCAGCGGTCAGTGACCTTGACTTTGTTATATGC 414793 36 100.0 36 .................................... GGCCTAGCCGCGTGGCCCAAAGGCTCGCTCGGCCGT 414721 36 100.0 35 .................................... TGTTCGACGGCCTCCTGTTCGGTGAGGTCGCGCAG 414650 36 100.0 36 .................................... AAGAAAAGCACCAGACCCTTCGGGCATGGTGCAAGT 414578 36 100.0 36 .................................... GACGATGATGACCATGGTTCCTTCCTTGAGAACCGG 414506 36 100.0 38 .................................... GCGGTCATGATCCTCGCTGCCAGAATCGAATGGTTCAT 414432 36 100.0 38 .................................... ATGGAACAGTCGTTGCTCATACTGCTCCCATGTCTCTT 414358 36 100.0 38 .................................... TATCACAACTTCCTCGATGCAATCGAAGGCCAGCTGAC 414284 36 100.0 37 .................................... CGCATCATCCCGATTCCGGAAGACATGTTCGGCATCG 414211 36 100.0 38 .................................... ATGTCACGATTCGTGTTTTTTGAGTCCTCAAGTCTGCC 414137 36 100.0 38 .................................... TGATGTAATCCGTCCACACATCACGCATAAGCGTGCAT 414063 36 100.0 35 .................................... AGGGATATCGTCAAATGGGATAGGCAGACACAACA 413992 36 100.0 35 .................................... TCGAAGCCGCAGGAGCAGCCCCAGTCGGAGCAGCG 413921 36 97.2 42 ...................................A CCAGAGCCGAAACAGTCACACGGCAGAAGCTCGCCGCCTGAA 413843 36 91.7 38 .............C.T...................A AAGTGGCTCGATGAGGAGCATTACTTGGTCATCCTGCA 413769 34 88.9 36 ...............T.....--............A GCGAACTCGCCGGACGTGCTGCTCGCCTCCGACGGG 413699 36 94.4 36 ...............T...................A ACCGTCATGCCGCCCTCGACCATCGTGACCTCGTCA 413627 34 83.3 0 ...............T......A.A...--.....G | ========== ====== ====== ====== ==================================== ========================================== ================== 71 36 99.3 37 ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGGT # Left flank : GGACTTCATTGAGGTATATCCAACCAAAGCATATAAAGGCACTATAAACGTA # Right flank : GATGTGGTATTCTTACGGAAGAGCACCCCCGTTGCCGTCTTTTCGATAGCTTCCGTGATATGGCCTGATTTTTGTTCCGCCCTTATAGTGGGGCGGCTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGTCCAAGGACCGGTGCAGACGCTTCGAGTTTCACCACGAGACCCACCGGAACGTCGCCAATTCCAGGTCCATCAAATCCTGGAAGGGCTTGCGTCGCCAGACGAGCCCGGTCTTGTACGCGCCGTCGGCGCTCTCGGCCATGGCGTTGTCGTACGAGTCGCCGACCGTGCCGGTCGAGGGAAGCATGCCGAATTCCCCGACCCTGGTGGTGCACACGAGGCTGATGTACCGCGCGCCATGGTCGGAATGGTGCACGAGACCGTCCGTGCCGCCATGCGGGGCGGCCCATGGTATCGCCTGTTCCAGCGCCTGCAGCGGCAGCTCCCTGGTGTCCATGGTGGTGGCGCAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //