Array 1 653061-652430 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJWS01000001.1 Enterococcus faecalis strain EN685 NODE_1_length_706749_cov_37.835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 653060 37 100.0 29 ..................................... GAAGGGTATGGAATAGATACCTTCACGCT 652994 37 100.0 29 ..................................... CGTTCTTGTGAAATAAGCACTTGGACATT 652928 37 97.3 29 ....................................C AGCCTTTCGGACGTTGTTCGGACACCTTT 652862 37 97.3 29 ....................................A CTCGCAAACTGATACGTTCTCTTATTAGA 652796 37 97.3 29 ....................................G ATAACAGAAAACCGCCTAGCCCAACTGTC 652730 37 97.3 29 ....................................A GATCGCAACAGTAATGTATTCAGTAGCAA 652664 37 97.3 29 ....................................C TCCCATTTGCGATCAATTGCAACACAATC 652598 37 100.0 29 ..................................... AAGCAAACAGGTACACTGAAAACACTATC 652532 37 100.0 29 ..................................... CTATAATAACCTAGAGGGATTTCAATGAG 652466 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAAACCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCTTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCAAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 116635-115609 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJWS01000004.1 Enterococcus faecalis strain EN685 NODE_4_length_206944_cov_44.4709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 116634 37 97.3 29 ....................................C TCTACCTCTAATACTTTTCCTGTATATTC 116568 37 100.0 29 ..................................... TATCCGATAGAATAAGTAGGTCTAAGTGC 116502 37 97.3 29 ....................................C CTTAGGCCATTTGTTGCACATCACTTTGA 116436 37 100.0 29 ..................................... GTTAAATCTGCTAAAAATAATGTTTTAGA 116370 37 97.3 29 ....................................T CCTCCTTATCAATTGTAACAGCAATATAA 116304 37 97.3 29 ....................................G AAAAAAGAACTAGACGAGACAGCAGAACG 116238 37 97.3 29 ....................................C GATGATTCAATTCTTTGATCACTCCTTTT 116172 37 100.0 29 ..................................... TCCCATAAGGTTGTGAAAAAGTCTTTTAT 116106 37 100.0 29 ..................................... GGTGCCTCATATAGTGGTGATGCTCTCGT 116040 37 97.3 28 ....................................C GCTTTGAACGGTGTGTTCACTGGTGAAA 115975 37 97.3 29 ....................................G TGAGATTTTTAATTCTGCTTCTCGGTATT 115909 37 97.3 29 ....................................T TCGCCTTAGTATCTTCTGCCAAAGTACTA 115843 37 97.3 29 ....................................T CTTGTTTTGCTTCATTCGTCACAGCTTGT 115777 37 97.3 29 ....................................T GAATGTAAGTCCATTCTTCCTCTGATAAT 115711 37 97.3 29 ..................A.................. TACCACGTTTGCGCATAGGTTTGTCTTTC 115645 37 94.6 0 .........A..........................C | ========== ====== ====== ====== ===================================== ============================= ================== 16 37 97.8 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : AATGTAAATGCTCATTATGATTTACATATGTTTTAGAATCATGTTGTTTAGTTTTCGCAGATACGATATGATTGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTTCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //