Array 1 19605-19769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHV010000007.1 Streptococcus oralis strain DFI.4.21 KNAFDENK_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 19605 35 100.0 30 ................................... TACCAGACAATGGTAATAAGACTTGACCTT 19670 35 100.0 30 ................................... ATTACAGATTTAAGTCTGATGTTGGATCAC 19735 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 3 35 100.0 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : CGTTAACCGTTACCGTGAGTTAATCAACTCTCTAGGACTTCGTCGTTAATCTTGCGTCTAAAACGTTTCTATACTTCGTTGCCTTCGCCTCGATGTACCATCAGTACAATCTTCGGCTTGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATAAAGCTCTCTGATTTCAGAGGGCTTTTTATGTTGTCACCTTATCTCGATATACTCAAGTATAATCTTTGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTTATACAATCTTCGGCTCATCGCCTAGTCTATAAACGGTTTATCCGGCAAGAATCATGATGCTAAGGGCGTTAAAAATCCGCATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGACTTCAGAGAGCTTTTTTATTGAG # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 77888-78714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHV010000009.1 Streptococcus oralis strain DFI.4.21 KNAFDENK_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 77888 36 100.0 30 .................................... TGGGTAGATGTGACTTACACTGTCCCAATT 77954 36 100.0 30 .................................... TACAAAATGGATGGCAACATCATCCTGAGT 78020 36 100.0 30 .................................... AGGATATCGTTGATTTCGTTGTTCACTTCA 78086 36 100.0 30 .................................... GAAGTTCGATATCGCTTACAAATTGAGCGT 78152 36 100.0 30 .................................... TACAGGTTGGACTTTTCTAAGTGGAGTAAC 78218 36 100.0 30 .................................... AAAGGGGGTGGGGGGTAATGGAAGAATACT 78284 36 100.0 30 .................................... CTTGAAAGAGCTACGACTTTAAGGTCAGCA 78350 36 100.0 30 .................................... AAGGCGCTAGACAGCTCCCTTAAAAACAAT 78416 36 100.0 30 .................................... TGTTGGATGGGAATGCTACTCCGACACTGG 78482 36 100.0 29 .................................... CAAGCCACGCAGGGTTTACATCATAGGTT 78547 36 100.0 30 .................................... CTTTTCCTGTTATCACAGTCAAAAACAACG 78613 36 100.0 30 .................................... TCTTCGATTAAGTCGATTCTGTAAGCTTGC 78679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : TGTTGGATGGGAATGCTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //