Array 1 45554-43736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAEP010000003.1 Streptococcus agalactiae strain iGBS445 NODE_3_length_228127_cov_71.7848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45553 36 100.0 30 .................................... ACTGAAATAAATATTAACCGCTCTCTATTG 45487 36 100.0 30 .................................... AATAAACTTTGTCCAATATGTAACTGGAGA 45421 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 45355 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 45289 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 45223 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 45157 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 45091 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 45025 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 44959 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 44893 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 44827 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 44761 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 44695 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 44629 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 44563 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 44497 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 44431 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 44365 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 44299 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 44233 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 44167 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 44101 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 44035 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 43969 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 43903 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 43837 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 43771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //