Array 1 511-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000151.1 Caldibacillus debilis strain B4135 NODE_430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 510 30 100.0 38 .............................. GCGAACACTCGATACCAACCCGGTCAAATTGACTTCGC 442 30 100.0 35 .............................. TACAAAGTGATTTCCGGAAATGGAACGGTTTCAGA 377 30 96.7 37 .....................A........ TTGTAATAGTCCGCATCAATAACCGCGATTCCGTTTC 310 30 96.7 39 ....A......................... CAAAAAAATAACCACCGCAAGATCTTGCGGTGGTTTCGC 241 30 93.3 0 ....T..........T.............. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 97.3 38 GTTTGTATCTTACCTATGAGGGATTGAAAC # Left flank : CCTCTCGACCAGCGGATCATCATGCGATACCGGATGGGGCCGCTGGAGAAGGAAGAGGTGGCAGGCTACATCGAGCATCGGATGAAACAGGCCGGGGCGAAGCATCCGATCTTCACCCCATCGGCGTTAGAGGCGATTGCCCTGCAGTCGCGGGGATGGCCTCGGGTGATCAACACGTTGGCCACGACGTGCCTGTTATACGGATATCAGCTGAAAAAGGAAGCCATTGACGAAGAAGTGGTGCGCATGGCCGCAGAGGAAATGGGGTATTAGCACGAAAGGGGCGAATCGGCCTCTTTTGTGCTTTCTCTTTTCCATCGGTCCATCAGGCGCGCTGGAAATCTTCATCTGAAAGAGCGCACAAACGTTTCGAAAGAATGTGCAAAATCCGGAACAATCCGCAAAAATTTTGCACATTATTTCCGAATCCGCCTGAAATAATTTGAAAAAGGGATTCTGAAATAATGTGATAGTTTACAGTCATACCCCACTCCGCAAAC # Right flank : CATTTAAAGCACCTTTCTTTTTAAGGGACTTTTTCAATTTGAATCAAGTCTTTGGGCAAGGACTAATTTATCTTTAAAAATCCCTAGATGTTTGAGCAAAAACTGTTGGGTTTTACGGTTATATCTTGGACAAAAAGGTGACTTTTTTTTCTTAGACGGAACAATTATCGCAATTAGTCATTAGCCACTTTGCCTCCAATTCCGCCAAATAT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26789-21230 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000042.1 Caldibacillus debilis strain B4135 NODE_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 26788 29 100.0 35 ............................. TTGTTATGGAAGATCCGTTCATTTATAAGGGATAA 26724 29 100.0 35 ............................. GAATTTGTTTTTGTATATAAAAAATTAGGCTTAGT 26660 29 100.0 37 ............................. ATATACCGCCTATAACGGTATTACTTCCGTTATAAAC 26594 29 100.0 37 ............................. AATTGAAAAGCCCCGCAATCACGCGGAGCTTTCTTTC 26528 29 100.0 36 ............................. GTTCGAGAAAGGCGTAAGCTGTTACGTCCTTGACGG 26463 29 100.0 35 ............................. GCTTCTTGGCGTGACATTGCCGGTTCGTAATGGAC 26399 29 100.0 36 ............................. TTAAATTCGAAATACTCGCATCGAGCTTCGTCAATC 26334 29 100.0 35 ............................. CTTGTTCTACTTCGATGAGAATTTCATCATTCACT 26270 29 100.0 38 ............................. GACTTTCAAATTTGATCAAATTGTACGTGGCAGAGATT 26203 29 100.0 36 ............................. GCAGTTCCGCGTGTCGCCCCTTCGTTGCCGAGTCGG 26138 29 100.0 36 ............................. TTCTCTCCTTCGTAAATTTTGAACTTACGGCTGTTC 26073 29 100.0 34 ............................. CGGGATGGCGGTTAGTTTAAGGAGGGGGTAAAAA 26010 29 100.0 35 ............................. CAAGGATGCTGGCGTCGTAGATATCAAACGGTCGC 25946 29 100.0 36 ............................. GATTCGACTTCGCGAAATGTACAGTAATGGTGCGAA 25881 29 100.0 35 ............................. GAACATAAAGACGATTTATCCGCAAAATCGTTTAC 25817 29 100.0 35 ............................. CAACGCCTCCATTCGGCACTTATATAGACAACTAA 25753 29 100.0 38 ............................. ATCGAAACAAGAAAAACTGTCTTATGCAACGTGAAATC 25686 29 100.0 36 ............................. GATCCCATTCCATATTTTTGAAACAAACGTTCGAAC 25621 29 100.0 36 ............................. TAGGTTATCATTAACATAATAAATCATCGCATCGAC 25556 29 100.0 35 ............................. CCTTGTGTCGTATTGGATAGATCGAAAAGGATTAA 25492 29 100.0 39 ............................. CTCTCTGCGGAAGAATTCAATCTGAACATCGCGGAACTT 25424 29 100.0 38 ............................. GCATCACCCACGACAGCAAGAGTCGGATCAGATACAAC 25357 29 100.0 36 ............................. GGTGCTGTTGAACTCTCCCTCGAACCGCGCGGGGAT 25292 29 100.0 35 ............................. TCGATATTGATGATGACAAGCCGATTGGCATAGTT 25228 29 100.0 34 ............................. AAAACAAAAAATTTTGACGGAAATCATTGAGACT 25165 29 100.0 38 ............................. AATATAGCTACACCAAGGGCGTTTCGTGTTGTTTCATC 25098 29 100.0 35 ............................. GAATATCCGAGTCCAGGATGATGTTTGTCGTGCTG 25034 29 100.0 35 ............................. AGAGGTTGATAAATCAACTAAAGAATTGCTACAAG 24970 29 100.0 37 ............................. CGCGGATAGTTGGCGAAAGAATTGCGGATATTCTCGA 24904 29 100.0 35 ............................. GCTGTTCAATTCCAACAAGCCTTAGGGCAATTGAA 24840 29 100.0 35 ............................. TACTGATGATATAGCGAGATATAACGAGTATTACA 24776 29 100.0 36 ............................. GCAGGAATCCTTCAGAAAAAATAGCGATGAGTAATA 24711 29 100.0 35 ............................. AGCAAATGCTCGATCTGACTTGCGTCATGTCGTGG 24647 29 100.0 36 ............................. TTGCTGGTCGATAACGACTTTGAAGAAGCGCAAGAA 24582 29 100.0 36 ............................. CGGCCAGGGATGGGATATATAAATAGACAGAAAAAC 24517 29 100.0 35 ............................. TGACAATGCGGACAAGTGACGGTAACATGATATTC 24453 29 100.0 36 ............................. CTGCCCTCTCTTTTATTTTTTTTGTCGCGAAAAAAC 24388 29 100.0 35 ............................. AAGTTTTCGAGTGTTGCAAAATAGAATATACTTCT 24324 29 100.0 36 ............................. TTGGAAAAGACTTTCAAAAGTAGATACGGTCGCAAC 24259 29 100.0 36 ............................. TTTAGGAAAGGGGAGTGAAGAGAATGGAACACGCAT 24194 29 100.0 39 ............................. ATACTACAATGCTTTAGAAAATCATAAACGAAAACCTTC 24126 29 100.0 36 ............................. CGGCTTCTTTCTGCATGTCCGCAATCGATACGCCGC 24061 29 100.0 41 ............................. TGAATGACGGCATTTGGTCCTTGTCGCAATGCTCTCGACAC 23991 29 100.0 35 ............................. GTGTGCTTTAATGAAATGCAAAGTTGGATTGAAGG 23927 29 100.0 35 ............................. GATCAAACCAAGCCATTTTTACGGAGGCAACGCTC 23863 29 100.0 34 ............................. TGTTTAACTGCTATCGTAACGGTTTTTGCTCCTT 23800 29 100.0 35 ............................. TTTGTTGAAGAAGGAGACGGAAAGTTTCCCGACCT 23736 29 100.0 36 ............................. ACATTCTGTTTGAGCAGGCGAAAAAGGCGAAATCGG 23671 29 100.0 36 ............................. AAGGATGCTTAAAAGTTCGTTACACTTTAGTCATAC 23606 29 100.0 37 ............................. GAAAGAATGCGAAAAGGACGAGAAAGAATTCAGCCAT 23540 29 100.0 35 ............................. AAGAAGACAATATCCCGCTCTTTGGATGGAAAGAT 23476 29 100.0 35 ............................. GATTTTACTGGCTTCGATCCTCAATTCAGATGGGG 23412 29 100.0 36 ............................. ATACTACAATGCTTTAGAAAATCATAAACGAAAACC 23347 29 100.0 38 ............................. TTACATGCTGATTTATATCAATGGCGTCGGTAACTTCT 23280 29 100.0 35 ............................. GCGTATCGGCTTATGTTGCAAAACTGCGTGAACTT 23216 29 100.0 35 ............................. GTGACGAATACAAAGAATCACGTGTTTCAACTTAT 23152 29 100.0 36 ............................. TTCATGTGATTAACCACAGCGTAAGATCCATAGACC 23087 29 100.0 37 ............................. GGATAAATCAAATCCGGGTTTTTGATTTTATTTAGGC 23021 29 100.0 35 ............................. CAGTTCGAACGAAGGCGCGATCGTGCTTGATTGCT 22957 29 100.0 35 ............................. ATGAGCATATTCAGATCCAGATCACCGTTATACCC 22893 29 100.0 37 ............................. TCCTTCGATTTTCCGAAGTTCCCTTAATTTTTTACCA 22827 29 100.0 36 ............................. CACTCGGCGGCATAATCGGCTATCTGTGGGGAGGAT 22762 29 100.0 36 ............................. ATGTTCGTTACAAGACTCAAAAGGTCGCGAATTCCA 22697 29 100.0 37 ............................. AAAGCAGGCGGAAAGTCGTCGTCATACTGGAAGATCT 22631 29 100.0 38 ............................. TCAATATTTCTATTTTGGTAAATCCATAGAGGAAATGC 22564 29 100.0 37 ............................. TGGGATCCCTTTTTTCCGATGTTCGTTACAAGACTCA 22498 29 100.0 34 ............................. GTACATCATAAGCAGTCTATGAACATGAATTTTT 22435 29 100.0 37 ............................. GAAGGAACAATTTCACAGGTTGCGGGCGGTGTTTCAA 22369 29 100.0 37 ............................. CAAGCCCGCTTTCTAACGATTATATAAGTAGAGGGAG 22303 29 100.0 38 ............................. TTCTCAGGCAAATAAAAAAGAGCCTTACGGCTCGTCTT 22236 29 100.0 36 ............................. CGTGTTAGTTTCGTAGAAGTTGACGAATTGAACGAA 22171 29 100.0 36 ............................. AAAATCGCAGCGCTCGACTGTTCGTGGGGAAGAGTT 22106 29 100.0 36 ............................. GAAACTGACGTTCGTTCGGTGAAGAAGACATATACT 22041 29 100.0 36 ............................. GCCACGGATGGATGTCTTCTTTGTACTCGGCGAGTG 21976 29 100.0 35 ............................. TGGAATACTACGTTCCTTTTGTGAAGGAGTTGAAA 21912 29 100.0 36 ............................. ATATCGTCCATTACCAAAAACGGAACGCGTTGACAC 21847 29 100.0 36 ............................. CGTCATCGACCGCGCGCACCGTGATATTGCCCGTAA 21782 29 100.0 36 ............................. AGCCAAAAGTGAGTATGACAAGCTTTTGGCCGAACT 21717 29 100.0 35 ............................. ATCAATTTCATCGTGTTGATTTTCTTCGGTTATCT 21653 29 100.0 36 ............................. AATTTCAGCTCCTCTTGGTTCGCCCCAATCAATTTC 21588 29 100.0 36 ............................. TTGGAATTAGCAGCTCGTCATTCACTTGCCAATCCA 21523 29 100.0 39 ............................. TATATCGTCATTGGCGACGCCTGCCGGTCGCTGGTTTCC 21455 29 100.0 37 ............................. ATTTTCCAAAGATGAATGAGCGCAAGCAGAATTTCTA 21389 29 100.0 34 ............................. GGCATTTTTCAACGTTTCCGGTATCGGCAACCCA 21326 29 100.0 39 ............................. GGTATTGAACGCAGTTTTGCCGGCTTTGACAGCTTTTGC 21258 29 89.7 0 .................CC.....C.... | ========== ====== ====== ====== ============================= ========================================= ================== 86 29 99.9 36 GTTTTATTTGAACGTAGTGGGATATAAAG # Left flank : CGTCGCATAAATGTCGCCTCCTTGGTCGAATTCGTGATAAACCGTTGAAAGCATGGTGGTCATATGTATGTCATTATAACCTATGATGTTGCGGAAGAACGGGTAGCCAAGGTCCATAAAAAATTAAAAGAATATTTAATTTGGACACAAAACTCCGTTTTCGAGGGCGAAATAACAAAAGGCTTATTGAAACAATGCCTGTTTGAACTGGAAAACATCATTGTGGAAAGAATAGATTCAATCAATGTTTATGAAATCGAAAATCCGAAACATTTAAAAAAATATACATATGGTGTTGACAAATCTTTTGATGAGATGTTTTTATAAAAATGCAGTGTATCAAGTTTTTTCCAGAAACGCAATCAAATATTGATAGAATTGGACAAAAAGGAATTTTTTTAAAATCTTTTACAAAAATACCGCCGGTGTACTGCAAAAATATTTTTTCCCCATACTCAAAACCTTTGATTTTAACGCTTTTTTTTGCACCCCGCTGAAGG # Right flank : GATGGACTCCCAAGCAAACAGGAATAAAAAACACATTGAAATACTGACGGGCTCCGAAATTCATAAGGGGTCTCTTTCATTTCGACGGTCAAAATTGAACAATAGGCAGGATCATCACTTCTTCGGTTATACGAAAACGAACTGATGGAGACGTCCTTAAAACGGCAGAAAAAGCTTTCCGTGCAGGGCTTCAAATATCAATCCACGTCTTTCCTTTTAACCTATTACCCCTAGAAAAACCCCCCGTTGCAGGAGGAAATACCTATTCATCCGCCTGCGACGGGAGGATCATGTCTTTCCGGACTTTTCTCAATATCTGATGCGGAAATCTTTGTAGCCCGCCTCTTCCTCTTTATACTCGATTTTCATGTCGGTGATCTTGATGAAGGGATTCAATCTTTTATTTAACGAATGGATGAAAGTCTCGATCTTTTCCTTCGTTCCTTCCACTTCCATTTCCACGGTGCCGTCCTCGTTATTGCGGACCCAGCCGTTGATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 46036-44599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000043.1 Caldibacillus debilis strain B4135 NODE_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46035 30 100.0 36 .............................. TTTTCGATGAACTTCATGCACAACCGAACCGCGACC 45969 30 100.0 38 .............................. CCGTTCCAAGATTGGCAGAAATCGCATCAAGCGACGTC 45901 30 100.0 36 .............................. GAACTACGTTTTCGTGTCACGGTCAACCCTGACGGC 45835 30 100.0 37 .............................. TTTCCAATCAAATAAGACGTTTCAGGCGTTCGATGTT 45768 30 100.0 38 .............................. TCGATCGTCACCTTCCCGGGGATCTTCAGTTTTTGGCC 45700 30 100.0 35 .............................. GCCAGCGGCAAATCCGGTTCGATGAGGTTTTCAAT 45635 30 100.0 38 .............................. CAAAAATTTTGAGTGGTGAAGAAAATGCAGATGACGGA 45567 30 100.0 37 .............................. AGCCGTAACCAACGAAAGAGGCGTTCGCTCGCCTCGC 45500 30 96.7 37 ...............A.............. CAATCTGCCTTTTTTCGATTACGACCGATGGGCCTGC 45433 30 96.7 37 ...............A.............. TTTTTTGAATGCTGGCCATATTTCTCCCTCCCTTTTC 45366 30 96.7 38 ...............A.............. AAGGATTCGCCGATGGCGGGAAGAAAGTCTTTGAAACG 45298 30 96.7 37 ...............A.............. TAATTTTTTTTGTGTATCCCAAATCGTCGAAGTCGTT 45231 30 96.7 37 ...............A.............. CACAGTGGCATTCATCAAACACCACGAAACAGCCACG 45164 30 96.7 38 ...............A.............. TTGTTTTTCATATCTTTTTTGAAATAGACTAGTCTTCC 45096 30 96.7 36 ...............A.............. ACGACATCCAGCGCATATTGTGTGGCTCGGTCTTTC 45030 30 96.7 37 ...............A.............. AATTCCTTCATTGTCATCCTGGGCAATCTGTAGCCGT 44963 30 96.7 37 ...............A.............. CGGCGTTCGTTTCTTCGTACACTTCGAGCCAATTCAG 44896 30 93.3 35 ....A.............G........... TCGGCGACCAGCTCGCCCCCTACATTCAGAAGTTC 44831 30 100.0 38 .............................. CTGCATCTCAGTACATAAATCACAAGGCGAACAGGCGC 44763 30 96.7 34 ................C............. ATCAATCTGTTGGGGTTCGCTGAACCCATCACGC A [44756] 44698 30 96.7 37 ...........................G.. TAAACGGAAACAGGATTCCTCTGAGTGGTACGGTTGG A,A [44681,44683] 44629 30 73.3 0 ....AA..T..T...A....T...GA.... | G [44617] ========== ====== ====== ====== ============================== ====================================== ================== 22 30 96.8 37 GTTTGTATCTTACCTTTGAGGGATTGAAAC # Left flank : TATGTCGCTCATTCCGCAGCTGACTTACGCGACGGATCACCCCGGATCGAAGATGCCCGCCATCCGCATGGGATTCTGGGTGACGGAAAAATAATCAAGGAAAGCATGGGTTGGAGATGAAGTCCAAAAATTTGTGTAAAAAGAAGCGGGCGCAAAGCGGATCCATTCCCGGAAGACTGTGTTCCTGGGACATGGAGCGGGAATTTACACAAACTTGAGGACTTGACCTGGGTTGGACCGGCATCCGATTTTCCAGCGGTCATATTGATCGTTTTTTATGGAATTTCCAGCGGAATCTTGGTTTGAAATTTTGTCGTCGACCCCCGATAGCGTCAAAATCCCGGGGGATCGACGACAAATCTTTTTTTGGCACCAGATTGTGTTAAATCCCGTAATATCAACATTTTTCCTCATATTGATCAAACGTTTACAATCAATTATAATAAAAATTAAACCGATTAGGAAATTTTTCCAAACCCTGATTTATCAACATTTTTTGG # Right flank : ATTCATAGAGACGGCCGTGGTAAACCGCACTCCGTTGTTGGTACTTACTTGTGAGCGAGCCCGAGCCACCTGTATGAAATCCGCAAGGCGTTTGAAAACGGAGACCGGGCAGAAGAGATCATCTTCCTCTTTCATGGAAAAAGACCTGCCGTCATGGGCAGGTCTTTTCGCATGCACCGCTCACTCTTCATTCTTCCAAAAATCATCCGCCAGCAGCGGAACTGGAAATGATCAAATCTGAAAATACCGGCATTCCCCTTTTCCGTCATAGTAAAACAATAAATAGTGATCCTCCCGGACGATTTTTTTTGACTGCAAAAAGGCCGGCAAGTCGATGGGCATTTTTTCCGTGACCACATGTTTCATCCATTCCCGCTCGGACAGGGCCTTCACCTCTTCCGGCAAAGCGGATTCGGGCAGCCCGCGGAAGATTTCCGCCCGTTCTTCCTTCGTCAAACCGTCTTCCCACCAGATTTTCCGCGGCTTATATTTCAGCCGGG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTTTGAGGGATTGAAAC # Alternate repeat : GTTTGTATCTTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 65629-65199 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000043.1 Caldibacillus debilis strain B4135 NODE_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 65628 30 100.0 35 .............................. TAACAGTAACCATTCCAATGAAGGCGAGAATCATG 65563 30 100.0 36 .............................. TCATGGACACGAACAGGGTATTCATTCGCCCGCTGC 65497 30 100.0 37 .............................. TGTCTCCTTGTGTTTCATCAAAAAGTCGCCGTTGGCT 65430 30 100.0 37 .............................. AAAATGACGTGCAGGGGCTCGGGTTGAAGTGGGAAGT 65363 30 100.0 38 .............................. CCGTATGCAACTCGGCAAGAATACGAGCACAAGTCGAA 65295 30 100.0 37 .............................. CTTGTTCAACCTCAATCAATTCTGCGGGAATAATCCA 65228 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 99.5 37 GTTTGTATCTTACCTTTGAGGGATTGAAAC # Left flank : ATCGTCTGCCCGCCCGATTATTTGAAATTCCTGTATGATGCCGGGATCGGGGCAAAAAATTCCCAGGGGTTCGGGATGTTTGAGAGCGTGGAGTGACCGAACTTCAAATCCAACCCTAAGCATGACCGGGTTCTGGATGTTTGAAAAAGTGAAGTGGAGGGGCACATGGTTTCGCGCGTGAAAAACGTTTTTATGGGCGGGGTTGCCGGCGGAGTGCGGGAAATGGCGCCTTGGAACTAAAATTTTCAAAGTTTATGTCGAAACATCATATTTTTTTTTCTTTGCGCTTATGTTATATTTGTCTCGGCAAATTGTCGTCGACCCCCAATAGCGCATAAACCCCGGGGGATCGACGACAAATCTATTTCGGAAAAGTAATACTTGAAATCCAGTAAAATCAATGCTTTTCCGTATATTGCATAAAAATAATCCTAAAATTATAATACAAAATAAGGAGATTAGGAATTTTTTCAATCCTTGATTTATCAACATTTTTTTGG # Right flank : TGACACGTGGGACGGGATAGGGCCGCCCGTGGAGGAGTTTTTATTTAACCTGTCCCGAAAACAGGGGTCAAAAAAGCGATGAGCCATCAACCTCTTTATCACATGGTAAATATTGGCGATTGATGGCGGTTATGTGATTTGATTAATGGTTTCTAAGGTTACCTTAACCTTATACACCTTAACCTTATACCCTTTAGATCCGGTTTCCTTATTTCTTCCCAACTTTTACAGTCGTCGAAAGAAAAACTCCCCGAAAACGGCGTCATTCCCGCGTTTTTGGGGAGTTCTTTATTTTTTGGTATGTAGATATGTTTTCGTCCTTTAATCTTTAAGCCCGTATGCGGGGATCTCTATTGGCCCAAACGCCTTTAGAATGCACCGCAAAAGGGTTTTCCAAAGACGGGCGAGTGGTATTTACGAGCCATCAATCCGTACAGATGGCGGGATCGTTGTAAAAGGATGGGAAAGCCGCAAGAAATTCATCCGGATGGCGTGCCGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 59771-60483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000056.1 Caldibacillus debilis strain B4135 NODE_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 59771 30 100.0 36 .............................. CGCCAATTTCTTGTCCACGAATTGGAGACATTCCTG 59837 30 100.0 35 .............................. TGCAATCAAGCATGTGAATTGGAAGTGGAAGAGTC 59902 30 100.0 37 .............................. TCCAATATGGGAAAGCGGTTGGAGCAGCGTATAGATC 59969 30 100.0 34 .............................. ACTTCAAATCTATCGGTCCAAGCTTCAATCCATC 60033 30 100.0 35 .............................. ACAATTTCATTAATTCAATTTCTTGTTCTTCTGTA 60098 30 100.0 37 .............................. CTGGGTTCAGGTAGACGGGGTACAGTTGGTGCAAGCA 60165 30 100.0 38 .............................. CACAAATCATGTTTGCCACTTGATGAAGTGGACCTACA 60233 30 100.0 36 .............................. CAGTTTTTCCACCAGCGCCTCATACCCGCGGTGCAT 60299 30 96.7 37 ....A......................... AAGTCAGGGGATTTTTTGGTGGTAGTCGGAAGTCCAT 60366 30 93.3 58 .............T.....A.......... TATTAGGAAAGGGTTCCGTGACCTGGACGCTTTCTGTGCCGTTGAGGTTTTGGTTTAA 60454 30 76.7 0 A............T...G.TA...G....A | ========== ====== ====== ====== ============================== ========================================================== ================== 11 30 97.0 38 GTTTGTATCTTACCTTTAAGGGATTGAAAC # Left flank : TCGGCGAAGAAGATTTGAAATTTATTCGCGCTGCGGCGGACAAGGATGCGGATATTTTTCAGTACCGTGATGAAGATGTGGATCGGGCCGGGGAAGTTTTGGACTGACCGTCCGGGGAAAACCGTGTGGGGGGATCCGGCATCATTGATAACCGAAGAGTGTTTGGATTGACCGTTCAAGCCGGCGGGAAAGTGATGCCGATTATTGGTGTAAGGACTCGGGTTGGATTTGGCGGTGGATCTTTTGCCGGATTCCCGATGCGCTGCCGTCGGTGTAAAGGTGTTGATAATGGAAGAGCCCCCGTTTCCTCTTGTCGTCGATCCCCAATAGCGCACAAAACCCGGGGGATCGACGACAATCGATTTTCCTGCGGAAAATCCCCCGAAATGCTGTTGCATCAACGTTTCCCCCGCTATTGATAAAAAATCCCCCATGAATTATAATGCTGATTAAGAACACTAGGATTTTTTTCAACCCTCGATTTATCAACGTTTTTTGGG # Right flank : ACAAGATATCATTGTCTATCTGTTCCTCTAATTTCAATCTTTTACCTATTAAAGATGTCGAAATCGTTTAACCGTTCGGCCGAAAATCTTTGATTGCGTTCGCCAGTCCTTTTCGGACATAAAACCGGTAATGAACGTTTATAAATAGAAACCTTTTTTAATTTTTGATGGCGACAATTGTTTTTTACTCCTTCATTTTTGTAAAATACACATGCTTTTTTTATTTCCAATGATGGGAATCAGCAGATATGTACCTGACACCGTTTCCGCTTTTTCCATCCCAAACAAAGCGGAAGAAACCATTCCTTCATAACAAAGACTGGCAGGTGCGGAATTTGGCGCGGAAAAAGAAAGTGATCGTGGATGTGGACACGGGGATTGACGATGCGTTAAGCATCCTCTACTTGTTGAAACAGGATGTGGAGTTGCTGGGGATCACGGCGGTTTTCGGGAATGTTTCCGCGGAACGGGCGGCGGAAAACACGTTAAAAATCTTGGGG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 656-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000071.1 Caldibacillus debilis strain B4135 NODE_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 655 30 100.0 35 .............................. GACGACGGCTTGAAATTGCGCGATTTTTTGAAGTG 590 30 100.0 37 .............................. CGATTACTTTTGCGAGCGGCAAAATCATATCACTATC 523 30 100.0 35 .............................. AAAAACGGCGAGCAAGTGCCGGGTGTAGCATTGAA 458 30 100.0 36 .............................. TTTCGGTCCCTCTAACTGCGTTTGATCCGCACGCAT 392 30 100.0 39 .............................. AGCATTTCAGCCGAATGTTTTTCGTTGAGTTGCTTACGT 323 30 100.0 39 .............................. TCGCATCTGGATTTCCTACGCCGGATAAAGAGAAAGAGT 254 30 100.0 37 .............................. GAAGTGGGAGACTTCTTTCGGAAAGAGGTTAAAATGA 187 30 100.0 36 .............................. ATAGGTGATGAATGGAGGGGGCGGCGCCGGATTTTC 121 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 100.0 37 GTTTGTATCTTACCTATGAGGGATTGAAAC # Left flank : CATCCCGCCGGTCGGATTTTGTAGCGGGAGGCGGTTTGTCGGCCGGGCGGGGCGGTTTCATTTTACAAAATTTCCCCTAGGGTTGAAATTGTTCCGCGCCGGTTTCGGAAAAGTACCGTGTCATAAAACGCTCACCGGCATCTATGTTTCGGACCGGGCGTAGATCACTGCATACATGGGTAAGTAGGTAAATCGCACTGCAGCATAAGGAACAGCCCGGCTACAGAATTGATAACGGGATAAATGGAAGGAAAATCCTTCCCTGTTTTTTCGGCAATAGTCGATCGATTGAAATTACGGGTCCCGAAATTGTCGTCGTCCCCCAATAGCGCACAAACCCCGGGGGATCGACGACAGTTGTTTTTCTTTTCACAATCTCTATGAAATCCTTGCAAATCAAGTAATCCCCGGGTATTGTCAAAAAAATCCCTATGCCGTATAATGCTAATTAAGGAATTTAGGAATTTTTTCCAAACATTGATTTCTCAATATTTTTTGGG # Right flank : CCCCGGCTCGGAGGGGTCATACTGTAAATTATCACTTTATTTCGGAACAAAAGAGCCATTTTTTTGCACATTCCTTCAGAAAGCCCTCTCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 20306-19613 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000121.1 Caldibacillus debilis strain B4135 NODE_205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 20305 30 100.0 36 .............................. TTGTTTTTGGAACTGATGAGACCAACATCATCGACA 20239 30 100.0 36 .............................. TTTATTTTCATCCCGAGACGGGAACGCCCACCCCGG 20173 30 100.0 35 .............................. CTTTGAAAAGCTGTCGCCATAATCATGATTCTTCC 20108 30 100.0 35 .............................. CGAAAAATCAAATAGTCGTAAAACCTTGATAATTC 20043 30 100.0 37 .............................. TTCAATTTCCTTGATCACTTCAATGTCGTCTATATCA 19976 30 100.0 40 .............................. CCTTTTCAATGGTTTCCTTTATTTTCTTGATGTGTTTCCA 19906 30 100.0 35 .............................. TTTTTTTTCCATTCCTCGTGAGAATATTGGTCAAT 19841 30 100.0 36 .............................. TAGCCAGTTCCGGGATATAGCCGTAATAGGTCCCAT 19775 30 100.0 36 .............................. TTCCAAGGTCCAGCCGTTGGCGGGGACCCTCACGAA 19709 30 100.0 37 .............................. CGCCGCTATCTGAAAGAAGTTTGGGGAGCGGAATTTA 19642 30 86.7 0 ....A...............C....A.C.. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 98.8 36 GTTTGTACCTTACCTATGAGAGATTGAAAC # Left flank : AAGGAAGAATTGTATGAGTTTTATAAACGCGGAGAACAGGTAGGAATAGAAGAAGCATTCTAACGCTGGGTCGAGACTTCTCAGAATTGGGAATTGAAGATCCTGAACAATTTTTATCGAAAGAATGGCTTTTTGGAAGGGATCGACAACCCTACAAAAGTGTTGAAAAGGAATCATATGGATTCAGGAACTTCGAACGGACAAGTGCGAGGATACTGCCTACATACAAGTATAAAAAATCGTGGGTCATGTGGGGTAAGTATGCAGGCCACTCCCTTTGACAAAGGATCGAAAATATCTCACCATAAAGTGTCGTCGACCCCCAATAGTGCACAAAACCCAGGGGATCGACGACAATTGTTTTTCTCCTTCCAAATGCAGTGAAATCCCCGAAAATCAAGTGATTTCAAGGTCTTGCTAAAATTTTCCCGTTGGATTATAATGCTAACTAAAGAATTTAGGAATTTTTTCCAAGCATTGATATAATCAAGATTTTTTGG # Right flank : GCCGATACTTTCAAGATACGGCGGATGCGTATTTCTGCAGCCCATCTTTGTTCTTGGGCGGGGCTGGCTCCCGGTAACCACGAAAGTGCAGGGAAATGAAAGTCAGGGAAGTCGACCAAAGGCAACCAAAAGTGGTTCTTTTACTTGGATTTAGGAAATCGACAAGGAATGAAGCCGCGTGTACTCCCGACTTTTACAGTTTTAAAGATAAAAACTCCCCAAAAACGGTGCTATCACCGGTTTTTTGGGGAGTTCTTCATTTTTTCCTATGTAGATATGATTTCATTCTTTTATCTTTCATCCCAAGGGCAGGAATAGCCTTTTTTACAAATGACTGGTTACATATTCCCGGGTCAGGCAATAGTATGTTTGTCCAACGCATTTTCGGGGAATTTTGATTGGCAATTTCATCTGCGGTTTTACTGTATTCGAGAAAAGGGATTACTGAATGATGAAAAATTGATGTAGATTTCTGCCCCATAGCATTTAAAGGCTCAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTATGAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 202-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYT01000145.1 Caldibacillus debilis strain B4135 NODE_319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 202 24 100.0 43 ........................ TCATCGTTCACACTTTGCTTTTGGAGGGCGACGGGTTTGTATC 269 24 100.0 40 ........................ CAGGATTTGATCATAATAATAATCCACTTCGTTTGTATCT 333 24 91.7 0 ....................AT.. | ========== ====== ====== ====== ======================== =========================================== ================== 3 24 97.2 42 TACCTATGAGGGATTGAAACTATT # Left flank : TTGGCGACCGCGATGTTAGATCGATTACTGCATCATTCCATCATTTTCAACCTAAAGGGGGAAAGCTATCAATTACGGGAAAAGAGGATCCAACAAGAAAAAAAGAAGGATCAATAAGGTCCTTCTGGGGAATTTTAAACCGGCGATTTTGGGGAAAAAATAATCGGCCTTGACAGAATGTCAGTTTTATAGTTTGTATCTT # Right flank : AAAGCACCTTTCTTTTTAAGGGATTTTTGTCAATTGAATCAAGTCTTTGGGCAAGGACTAATTTATCTTTAAAAATCCCTAGATGTTTGAGCAAAAACTGTTGGGTTTTATGGTTATATCTTGGACAAAAAGGTGACTTTTTTATTGAGCATTGTATCGACTTAAACGTTTAGCTTGATCTAATGAAACTGGAAACTTTTTTGGAATATCTTTTATCCCGAGTTCGACAGCGACTAGGCAAACAAAATGCCTCTGATCCCTTGATACAAAAGGGACGAGAGGCA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTATGAGGGATTGAAACTATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //