Array 1 287-719 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRAS01000039.1 Campylobacter jejuni strain CB355 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================ ================== 287 36 100.0 30 .................................... TCCGAAACCTCAGAAGTTATTTCTATTCCT 353 36 100.0 29 .................................... ACAAAAGGTCGCCCAAGAAAAGAATACTA 418 36 94.4 30 ..........G...........C............. AGCATACTCAAAATATATATTAAATTAATA 484 36 94.4 30 ..........G...........C............. ATTTTGCTTGATTTTATTCAAAAAAATGCC 550 36 88.9 96 ...C..T....C..........C............. TTCAAACATATTCCATAATATTTTATATTTATTTTTTCATGCAAATATTTAATAAAGTATTATTTAAAAATATAATATTTTTTTAAGTAAAAGAAT 682 35 86.1 0 ...C.TT....-.......................T | A,AA [685,687] ========== ====== ====== ====== ==================================== ================================================================================================ ================== 6 36 94.0 43 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : ATGAATAATGTTTTGTTGCACAGAATAACTGAGAAAGGAAACATTCGCTATTATAGCATAGAAATTATTGCCACTCTTTTTGAGGAATATATGGTTGAGAGAGTTTACGGAAATGTGCGTTTTAAAAGTTGCACAGGAAGAAAAAATAATGTATTTCCAAGTTTTAATGAGGCACAAATTTTTTTTGAGAGGTTAAAGAAACAAAAAATGAAAAAAGGGTATGCGTAGGTTTTTGCTCAAAAAATAAGAAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCTA # Right flank : TAAAGGTTTAGCACTTCACCTGAGCGTTTATTCGTTAAAAAGTGCGTTTTCTATAATTTAATTTTATTACAATCCTTTCTAAAGGCTAACTTTATCAGGGCTTGAAACTCTCTTATAAGATTTTCATCTAGCCTTTTTGGAAAATCAGGCAAAATCAGTTCATCTCCTACCTTTTCCATCTCTTGCGGTAGTCCTGCAATCTCTAAAGTGTTTAAATTTGCTACATAGCCTTTATATTTGATTAAATTCATATCATGGCTAAATTCAAATTTATTACCATCTATAGTATGTTCTATCAAATTAATAAAATAATTATCAATGATGATATTTTTCAAATCTATTATATTTGCTAGAATTTTTTTAGAACTTACTTTGGAAACATTATCTAAAATGCACTCATATTGAGTTTCTATCAATTTTCCTAAATCATCATAATCAAAAATTCTGCCATTTTCACAAACTGCTAAATTATCTCGTATTAGCCAGAATTTATCACCAAA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : ATTTTACCATGTAAACAATTAACAATAGGCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18763-18206 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRAS01000013.1 Campylobacter jejuni strain CB355 13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18762 29 100.0 37 ............................. TCTTGACCTAGCTTTTCAAGCCAAAGTTTGATTTTAC 18696 29 100.0 37 ............................. TATTCATCATAATTTTGCCAATAATCAAGAATTTTAT 18630 29 89.7 37 ...............C..G..A....... AGTCTTCTTTTAAGATTAATGGCAAAAAGCATTTTAC 18564 29 100.0 38 ............................. TGCTCAAAGATCGTTTTGATAACAATTCGAAATTTTAC 18497 29 100.0 37 ............................. TATTCTACCCAAATACGCATTAAACTCATCATTTTAC 18431 29 93.1 37 ...GC........................ CAAATCCAAAGAGTGTGAAATGGAAAATTAATTTTAC 18365 29 96.6 36 ...G......................... ATCTTAGCACCATAAATCGCTAGCTATAGATTTTAT 18300 29 96.6 37 ...G......................... CTTTCAAAATCAATTTTGCAAACTTTAAAAATTTTAT 18234 29 86.2 0 .....GG.T...................A | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.8 37 CATATAAACAATTAATAATAGGCTAAAAC # Left flank : CTGATTTATTTGTAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCTATTTTAC # Right flank : TAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATCGTTGTAATTTTGGCAATTTTAGAATCGCTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTTCCCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : CATGTAAACAATTAATAATAGGCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //