Array 1 63270-61778 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXB02000011.1 Salmonella enterica subsp. enterica serovar Anatum strain HIY0079 NODE_11_length_144419_cov_23.258330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63269 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 63208 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 63147 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 63086 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 63025 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 62964 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 62903 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 62842 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 62781 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 62720 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 62659 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 62598 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 62537 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 62476 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 62415 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 62354 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 62293 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 62232 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 62171 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 62110 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 62049 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 61988 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 61927 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 61866 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 61805 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //