Array 1 111891-111558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFGV01000004.1 Photorhabdus aegyptia strain BA1 BA1DRAFT_contig_3.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 111890 29 100.0 31 ............................. TCTTTTAAAATGGCAATTCCAACCTGAGCGC 111830 29 96.6 31 ............................T TGGCAAGGTTGTGCTCTACCAACTGAGCTAT 111770 29 100.0 36 ............................. GAAAGATGCGAGCTGGATAGTCGCCGCCGCTGGAGA 111705 28 69.0 32 ............A...-....CTTAGAA. TCAGGAAACGAAAAATTCAACATTACGTTCGT 111645 29 72.4 27 .................TT..AA.ATA.G ATTATAAAGGATTTAGACTTGTAGATC GACA [111630] 111585 28 65.5 0 ............A...-....CAGCGCAC | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 83.9 32 GTTCACTGCCGCGCAGCGCAGGCAGCGTA # Left flank : AAGCGCTGAATGACTTGCAAACATTATCTTGGTTAAAAGGACTCAGGGATTATACTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCTCGGCAGTGTATTCCAATAAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAAAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTATCAAACAAGGGCCAATACAAGACAAACCAACTCTGGGAGTTTTTAGTTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGCTTTTGTGCATATTCTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCATTTGCGAGTTGGTCCTGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCACATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAACCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.20, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGCGCAGGCAGCGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10633-10365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFGV01000028.1 Photorhabdus aegyptia strain BA1 BA1DRAFT_contig_27.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10632 28 100.0 32 ............................ ATGGATACGCGACGCAAAATTACGTTTTACCT 10572 28 100.0 32 ............................ AGTATTAGTAATCCAGTTCTCCGCAGGCACGA 10512 28 100.0 32 ............................ ACTTAATAGCACCAGATTGTTGAGCGATGTGC 10452 28 96.4 32 .................T.......... CTCGATAAACAGCCGGAATCGGCAATTAAAAG 10392 28 75.0 0 ..G..T..T..............TT.TC | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTAATTATTAAGCTGTGCTGTCACTAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACCGTTGAAAGTCAGCCTTCCCCGCACCTTATTCTTGACCCTTTTTTAAGGACTGATTTTAATTTGTTGATTTTCAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : AACGGAGGCAACCATGAGTCATACCCGTTACGAAACTGATGTGGTCGTTTGGGCAAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATAGATATAGTTAATATTGCCGAGGAAATTGAGGACGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGGCAGTTTTGTTGTCCCATCTTTTAAAATGGCAATTCCAACCTGAGCGCCGTGGTTCAAGTTGGCAGCGAACTATCAAGGAACAGCGAAAGGCACTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCAGTTTCTTCCGCTGTCGATGAAACAGGCTTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAGTTCTATCCTGATTAAACTTCAATGAGTTGATTTATTTGACGCACTGACTTCGATTGGTGCGTTTTTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //