Array 1 3052880-3054167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033715.1 Yersinia pseudotuberculosis strain FDAARGOS_580 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3052880 28 100.0 32 ............................ TGCCGCGCTAATTCGATTCAGGGTATCGGCCA 3052940 28 100.0 33 ............................ GAGTGTTTCGCCATCACGATCCAACAAATCTAT 3053001 28 100.0 32 ............................ GAAGTACGGTCAGGAGCCGGGGGTGCAGTTTT 3053061 28 100.0 32 ............................ GTTCGAAATTATCCTTACGTGCAAGGAGCCGT 3053121 28 100.0 32 ............................ ACCATGAGAGGAATGAGAATACTGACGACATT 3053181 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 3053241 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 3053301 28 100.0 31 ............................ ATGCCACAAATGAGTTTGTTTCCATAGCAGG 3053360 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 3053420 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 3053480 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 3053540 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 3053600 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 3053660 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 3053720 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 3053780 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 3053840 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 3053900 28 100.0 32 ............................ ACTCGATATCCGGTGCCGCACTTACATCAATA 3053960 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 3054020 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 3054080 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 3054140 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AGGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3679873-3681282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033715.1 Yersinia pseudotuberculosis strain FDAARGOS_580 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3679873 28 100.0 32 ............................ AATGAAACGCCGATCAGTGTGGACATTATCAG 3679933 28 100.0 33 ............................ CTGTTGAAAGCTCCCTGCCTGAGCACTAATCCC 3679994 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 3680054 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 3680114 28 100.0 32 ............................ CTTCAAAATAATGTTAATGCTAGGCTAGAGGC 3680174 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 3680234 28 100.0 33 ............................ GGTTGTTCAGGGTAAATAAATCTCACCAGCCAT 3680295 28 100.0 32 ............................ TGAGCGATGGAGTGCCGCAGCTACACAACAAC 3680355 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 3680415 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 3680475 28 100.0 32 ............................ GGCTTCGTTGCCCCACAACGCGGGGACCAACT 3680535 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 3680595 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 3680655 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 3680715 28 100.0 32 ............................ AAGTAGCAAAAAGATTTTTAGTATAGATAAAT 3680775 28 100.0 32 ............................ AGCTGTAGGTTCGTCTGCGTCTGTTATGGCCC 3680835 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 3680895 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 3680955 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 3681015 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 3681075 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 3681135 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 3681195 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 3681255 27 89.3 0 .....................CC.-... | T [3681281] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4645522-4643150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033715.1 Yersinia pseudotuberculosis strain FDAARGOS_580 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4645521 28 100.0 32 ............................ GGTTCCCGGCGAACCCAACATGGCAATATTTT 4645461 28 100.0 32 ............................ AACTTCATAATAACCATTTTTACGGATGGCAT 4645401 28 100.0 32 ............................ AGCTACTATCGGGAGAACATCAGCGGTACAAA 4645341 28 100.0 32 ............................ CCTTGGCAAGCCCATTCTGTTTCGGATAACTG 4645281 28 100.0 32 ............................ TCACGAGTTTTAACATAAGTAAATGTACTACG 4645221 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 4645161 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 4645101 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 4645041 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 4644981 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 4644921 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 4644861 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 4644801 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 4644741 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 4644681 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 4644621 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 4644561 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 4644500 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 4644440 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 4644380 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 4644320 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 4644260 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 4644200 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 4644140 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 4644080 28 100.0 32 ............................ ACCAGCCTCCCAGCTCATAACCGTACGGCCAA 4644020 28 100.0 32 ............................ TGTAAATACCCGGACAAACAAGACAACTCCTG 4643960 28 100.0 32 ............................ CTCCGGAGTCACAACCATCTCAGAACAGATGT 4643900 28 100.0 34 ............................ CCAGATTTGATTGGCGTGGGTTACTACGTTGAAT 4643838 28 100.0 33 ............................ AATTGACACTAGCACGTTACTTAATAGTCAATA 4643777 28 100.0 32 ............................ ATAAGAAAAATTATGAAGAGAAAAACCACATG 4643717 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 4643657 28 100.0 32 ............................ GCATAGTTAAGGGGTAAGAGATGAAAACTGAA 4643597 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 4643537 28 100.0 32 ............................ AGTGGTGATTACGCAATGCAGCAAACATATAA 4643477 28 100.0 32 ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 4643417 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 4643357 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 4643297 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 4643237 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 4643177 27 85.7 0 ...................A-.A.T... | C [4643153] ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //