Array 1 24330-24533 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894217.1 Riemerella columbina DSM 16469 C237DRAFT_scaffold_0.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================== ================== 24330 48 100.0 30 ................................................ TCAATCAGTCGCTAACACATACGCAGTAAG 24408 48 100.0 30 ................................................ AAAAAATAAGTAATTTTTTACGCCTTTAAT 24486 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ ============================== ================== 3 48 100.0 30 GTTGTGAATTGCTTTCAAATTTTTACTATCTTTGCGATAGTTCGCAAC # Left flank : AGTATATGGAAAAGATGTTGTGAATTGCTTTCAAAATTTACTATCTTTGCGATAGTTCGCAACAAGATGTTATCTTAATTATAGTACAAAGGTGTTGTGAATTGCTTTCAAATTTTTACTATCTTTGCGATAGTTCGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAGCACAGAAACATAT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCGATAGTTCGCAACAAAGAACTTCAATTTATCTTAGACGAAATCGTTGTGAATTGCTTTCAAATTTTTACTATCTTTGCGATAGTTCGCAACCTCAAAATTTAATCCACTGTTTTTCAGTGGATTTTTCGATTTTATAGGATGGTGATTTTTATTCTTTTTTTGGTTTATCGGATATAAGATTTCTTATTTTTTTATTCTAAAATAACTCCAATTGTTGGTAAGTAGGGGGTGGATCTTCTCGTTTTTGTGAAAAAAAAATCTCAATATCGCCAAATTGTTTATCGGTAATATGCATAATCGCCACTTTTCCGTATTTGGGCAATATGGATTTTACTCGTTTGATGTGTACTTCTGCATTTTCTCGGCTTGGGCAGTGGCGTACATAAATAGAGAACTGAAATAGGCTAAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTTACTATCTTTGCGATAGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 10137-10436 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894262.1 Riemerella columbina DSM 16469 C237DRAFT_scaffold_5.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 10137 31 100.0 36 ............................... ATTTTTTGGGCTAATTCTAAAGTCTTAACGGCGTTT 10204 31 100.0 36 ............................... AAATTTTAGACAAGCAAAAAATTTAAAAAAATTTAA 10271 31 100.0 36 ............................... ATGGATTGTATTTTGAGGGAGGTGCGTTAAGTGCCT 10338 31 100.0 37 ............................... TTAGATAAGGGGTAATTTTCCTCAAAAAAATCCCACT 10406 31 90.3 0 .....................G.......CT | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 98.1 36 GTTGTAATTGAACCAATTGTGTAATTGAAAC # Left flank : AGACCTTTTCTTCTTAAAGACGGTGGAGATATAGAGCTTCTTAGGATAGAAGACTCTGTAGTCTATGTAAAATTATTGGGTAACTGTTCAGCTTGTCCAGTAAGTTTTTCTACCATGAAACTGGGCGTTGAAACTACAATTAAAGAAAGAGTTCCAGAAATAACACAAGTGGAAAGTGTGGAAGAGTAAAATCTCGACATCAGCCCACTACGGACTTACAAACTATTCCCGTCTATTGCTGATAATATAGACGGGAATTTTTAATTTTGAGGAGTTTCTAGAGTAGAGTTTTATCGTCGAACGCCTCCAAAGTAATCTATTTTTTGGCAGATTAAGTAATATTTTTTTTATAATTAACTCAAAATAAGTTAGTTACTATGTCGTCGATTCTAGGGAGTAATTCTATTATTGATGGTCGACGATAATTTTAACAAAAAATGTGTATATTTGTATAGTCGTTATAATTGAAAATCAAAGGATTGAATTTTTTATTTTAACGG # Right flank : TATCATTCAATGTTCTGTTTATCGAAACACTTCCTTATTGTAATTGAACCAGATGGAATAAAAAATCCTCAATATTTAGTGTTATTGAAAATTTTAGCCTTCATTCTAAAGTGTTGATTTATTCAGAATTTAAACTAACCCGCAGATTTTTAAACTGATAAAAATCATTATATTTATTTGGAATTATTTTATATAACTAAGTTATCTTTGCAGAAAACCAAATTATATTGAAAGCAAAGTTGACTCATTACGGAAAGGTACTTCCAATATCTGTACTATTATTTTTAAGTCAAAATGTTGAGGCTCAAAAGGATAGTGTTAAAAGTAAAGAGATAGAGGAAGTTGTGCTTACAGGTTATACTAAAGTAAAAAATAGAGTGTTTACTGGAGCAGCAACTCAAGTAAAACTTAAAGATATCCAGTTAGATGGTGTGCCAGATGTTTCTAGGATGCTAGAAGGGCGTGTGGCAGGGCTTAATATCCAAAATGTAACGGGAACT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTGAACCAATTGTGTAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 11990-10968 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894282.1 Riemerella columbina DSM 16469 C237DRAFT_scaffold_8.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11989 30 100.0 38 .............................. AATTTTTAGAAAGCAAAAAATTTAAAAAAAATTTAAAA 11921 30 100.0 36 .............................. AAGCGATTGAAGCAAGTGGAGAGATGTGTAAAAAGT 11855 30 100.0 37 .............................. TACATACATATATATATATATACAGGATAACAAAAAA 11788 30 100.0 36 .............................. CGGCGGGTATAACCTTCTGCTTTTCGTTTAAATTTA 11722 30 100.0 36 .............................. GGTAAGGCTATAACATTAACCATAGTGGTCTAATGT 11656 30 100.0 36 .............................. GGAGGTTACAGTAGCATCAGGATTAAGTTATTGATT 11590 30 100.0 37 .............................. ATGTAATTTATCGCTTGTCAGTTGGTTGTTCCCTTTC 11523 30 100.0 37 .............................. ATGAAAATTTAGGTTCTTTTCTTTGAAAATACCCCCA 11456 30 100.0 37 .............................. CTTCTTAAAAAAAGATTCTCACCTAAATACACACCAT 11389 30 100.0 36 .............................. AGCAGTTACAAAATAATTTAAAATAATTTAAAAATA 11323 30 100.0 34 .............................. GAGTTCTGCTCCCTAAATCTTTGGGTTCTTTCTA 11259 30 100.0 36 .............................. AGCAGTTACAAAATAATTTAAAATAATTTAAAAATA 11193 30 100.0 35 .............................. TTCAAAAGTTATAAGCAGTAGTTTCGTAATTCCAG 11128 30 100.0 35 .............................. TAAACTTACACTTAAAACTGAGGAGGCAGCTGATT 11063 30 100.0 36 .............................. TTGGTTTGAGGCACTAAATCACCTTTCAAAGTACCC 10997 30 93.3 0 ...........................T.C | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.6 36 CTTATAATTGGATTGTATCAGCATTGAAAT # Left flank : AAGTTGTATATTTACATAAAATTTTGGAAAGTGTACTGTATTTTGGTTTATGATATAGGAGAAAAACGCGTTGCTAAGATGCTCAAATTGTGCAGACAATACCTCAATTGGATACAAAATAGTGTTTTCGAGGGAGCGATTAGCGAGGTGAAACTTAAAGAATTAATTGCCAAAGCCAAACAAATCATGGATGAGGAGGAAGACAGTCTAATCATTTTCAAATCACGCGATGAAAAATGGTTGGATAAGCAAGTGGTAGGTAAGGAAAAAAATGATTTGGATAACTTTTTGTAGTCGTCGAACTACCCAAAATAGAAGCGTTCTTTGACATACTGAAAAAATAAAATTTATAATAGGTTGAAATATAGATAATTATATTGTCGTCTATCCTAGGGGGTAATCATATCATTGAGGGTAGACGACAATTTTACCAAAAAAGTCGTATATTTGCTGTGATTTTACTATTGAAAATCAAAGAGTTGTTATTTTTGGGATAACGG # Right flank : CAATAAAGAAAAATAGATGCTATTTCGCATAGTAAAATTTTAAAATCTAAAGAAGGATATAGTACTCTTATCACTAAAAATATTATATTTGCAAAGTGTATAAGAAGATAGTAGTGTATGGCTTTGGTTTAGCAGTGTTGGCAGGGTGTCAGCAGGAGACTGTTCCCAAACCAAAAGGTGAACTTAGATTGGAATATCCGCAGGCTCAATATCAAGATTTTAAAAGCCCTTGCGGATATGGTTTTGAGTATTCCGATTTTGCAACAATTTCTGGTGCCAAGCAAACCCCATGCTGGTATAATCTAAGCTACCCAAAGATGAAAGCTAATGTTTTTATCACTTACTTCCCTATAAAAAACGATTTTAATTTGCATATAAAAGAAGCCGAAAAGATGGTCTACGAGCACACCATAAAAGCATCGGCTATAGAAACCAAATCGTTTAGCTATCCCGAACATCAGGTCTTTGGTAATTTTTATGAATTAAAAGGAGAAACGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATTGGATTGTATCAGCATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //