Array 1 393106-391577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWE01000001.1 Vibrio cholerae strain VcCHNf5 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393105 28 100.0 32 ............................ TGTGAGTGTTTCTGCTCTCGATAGCACCCCTT 393045 28 100.0 32 ............................ ACTCGGCGATCGCCGTCTCGCTAATCCTTGTG 392985 28 100.0 32 ............................ TACCCCGAATGGGTTCTTGAAGTAGAGTCGCG 392925 28 100.0 32 ............................ AGTCTCCTGTAATTTGCGTGAAACTTCCGCTT 392865 28 100.0 32 ............................ TTTTCTCTACATTCTGCCTATTTTCGATGGTA 392805 28 100.0 32 ............................ ATAAGGGAACAATTTACGTACTCATCCCCCCA 392745 28 100.0 32 ............................ TAGCAGAATTGCGCCAGAACCCCCGAACACGT 392685 28 100.0 32 ............................ TGTATCTTACATCACTCGTGGTGAGCAAGAAG 392625 28 100.0 32 ............................ TATTGACTATTGCATATACCGAAGATTTAGGC 392565 28 100.0 32 ............................ TCATTGCCGCGCTGGCGTTGTATCTTTCCATT 392505 28 100.0 32 ............................ TTTAATGTGATTGCTCATCACTCTTCCTCATC 392445 28 100.0 32 ............................ AGTACGGATACTCAGGGACGTTTGAAGAGTTT 392385 28 100.0 32 ............................ TCGAAGTAGATTTTCCGCGCCGCCTTTTCTAT 392325 28 100.0 32 ............................ CACAACAATCATTTCTGCTGCTTCAAGATCAT 392265 28 100.0 32 ............................ GTCTTTACGCAGCTTTCGCATAAAACGGTTTA 392205 28 100.0 32 ............................ TTGAACGTTTTTGGGGTAGCCACGTTTCAGAT 392145 28 100.0 32 ............................ TTAGTCCATCAACCGCATTCTTAACTTTGGCC 392085 28 100.0 32 ............................ ATAAAAGCTGAGCAAGCAGGCAGTGCGCGCAC 392025 28 100.0 33 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTTC 391964 28 100.0 32 ............................ TTTATCAAGCGCATTCTGTAAATACGCTTTGT 391904 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 391844 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 391784 28 100.0 32 ............................ TTCAAACCTCAGCTGCCGACATATTGCGCTGC 391724 28 100.0 32 ............................ TTCAAACCTCAGCTGCCGACATATTGCGCTGC 391664 28 100.0 32 ............................ TTCACGGGCTTGTTTATCGACCATCGAAATAT 391604 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGGCCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32143-34092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWE01000019.1 Vibrio cholerae strain VcCHNf5 Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32143 28 100.0 32 ............................ TCAAGCACTTCAAAGCCGTGAACTTGGTGAAT 32203 28 100.0 32 ............................ GCATTAAGCGAACGGATAGATGTTGCTTTTAG 32263 28 100.0 32 ............................ TTGATGCAGCATAGTTTGCAGCCGCTTGAAAT 32323 28 100.0 32 ............................ CTCCAAAGAGAGCGTTCTACTCCTTGATGCAG 32383 28 100.0 32 ............................ TGCCATTGTGTCTATATGGCTCAGCATGTTGC 32443 28 100.0 32 ............................ ACGTGCATATTGCCTAAACTGCCCAGCTCTAT 32503 28 100.0 32 ............................ TCCTTTGCCTTTAACACCGGATGCCAGCGCTA 32563 28 100.0 32 ............................ TTTCATGATTTGGCTTAGCGTGGCAGGAGATA 32623 28 100.0 32 ............................ TCACCATCTGCAGGTTTTGCTAACTTACTTTC 32683 28 100.0 32 ............................ TGCGATTGATTTGTTGAAGGTTACACGTTCAA 32743 28 100.0 32 ............................ GATACAGGTCTGTAAATCGTCTTCTACATGAC 32803 28 100.0 32 ............................ ATTTCAGGCATTTCGCGACGAGCATTAGACGT 32863 28 100.0 32 ............................ AGTATTAGACTGCCATCAGGAAAGTGAAACTT 32923 28 100.0 32 ............................ TTCAATTTTCGCCTTCAGCTCTTTGCGCTGCT 32983 28 100.0 32 ............................ ACAAGCAGAACGGTTTCTTTGGTGCGCAAAAA 33043 28 100.0 32 ............................ CGGTTTTCAGTTCGCAGCAACATTCAGCATTC 33103 28 100.0 32 ............................ ACCACACGTCGGCGCGTTCAAATGATTTAATC 33163 28 100.0 32 ............................ AGTACGCGCCGCTTTACCTGTGACACGCAAAA 33223 28 100.0 32 ............................ ATGTAAAGCTGGTTGATTGATTCACATCGAGA 33283 28 100.0 32 ............................ TGAACGCCTAGGCCGCGCTCATTAATTCCCGA 33343 28 100.0 32 ............................ TAGCTCTGATAGCAGTTTGTCGGCTCGAATTA 33403 28 100.0 32 ............................ TATCACAAGAAAATTCAAGCCCACAAACAAAA 33463 28 100.0 33 ............................ TTTGAAGAGGCGACAACGATCACCTTGCAGCTT 33524 28 100.0 32 ............................ TTTAACCATGTCGGTGTTAAAAATCATTGGAA 33584 28 100.0 32 ............................ TTACGGCAATGGCCGTGTTAATAAAATCGTGT 33644 28 100.0 32 ............................ GTGATTTTCTCACCGGATACGGTCACAGATAA 33704 28 100.0 32 ............................ AGACTGGCGCTTGGCTTTATTGTCCGTTTCAA 33764 28 100.0 32 ............................ ACTTGCATCAGTTCTGACAGCAGAATGAGTAC 33824 28 100.0 32 ............................ TCCGACTGCACCGCAACCAGGTCAGACGGCGC 33884 28 100.0 32 ............................ GCTATCCGTTTTCGATTCTCAATCATTCGATC 33944 28 100.0 32 ............................ TGACCGAAGATCACAACGGGGTAAACGTCTGC 34004 28 100.0 32 ............................ TTTAATGGCTTGGGTTGGAACGGTCTCTTCTT 34064 28 92.9 0 ......................G.A... | T [34084] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATATTATGGTTGGGGTTATTTAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGTTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCTGGCCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4501-3633 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWE01000028.1 Vibrio cholerae strain VcCHNf5 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4500 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 4440 28 100.0 32 ............................ AACTGGCCGTAGCTGGATCACCTTTGAAGGCT 4380 28 100.0 32 ............................ ATCTTCTTCGGCCTCATCAATGCTGATTGAAG 4320 28 100.0 32 ............................ TCTAAAGAAGTGAGATCGGCAGCATTAAACCT 4260 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 4200 28 100.0 32 ............................ TCTTCGGTGTTGTCTTCAATTGCAGCGATCAG 4140 28 100.0 32 ............................ TACCGCCCGACCTCAAGGCCTTCACTATCTGT 4080 28 100.0 32 ............................ GCTATACAGTGACATTGAGGTGTGGTCGCCAG 4020 28 100.0 32 ............................ TAACGTTATGTTACCTAGGAAAATCTCGTTTC 3960 28 100.0 32 ............................ GAACCGGAAGACTCGACGGAGAAGGCGACAAG 3900 28 100.0 32 ............................ ATTGTCAAACTCAAGAAAGACTTCTTGAGGCT 3840 28 100.0 32 ............................ TTGAATGCGTCTTGAATCCCTTGTGGGTTCAG 3780 28 100.0 32 ............................ TTTTCCCGCATAGTTCTGCTGAGACGAGCAAC 3720 28 100.0 32 ............................ TAAAATCTTATCTGTGATTTCTTCTGCTGTTT 3660 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCTTTTCGAGAACACGTTATAGATCCAATAGAACAAGAAAAACAAGGAATAGCATACATTCCTGATGCTGACATTGAGCGTAAGCTAACTCCATTAGCACAACTTTCCCCATTATATAATCCGATCATACATCACTTGCAGGAAAAATACGGCCCTAGCTTTCTTATTCCAGTGGACTTCGACTCACCTGAATTATCAATTCGAACCGAGTGTGACGAAGATGAATAAGCCTAACAAACGCTTCAAGAGGGACAGCCAACGCATGGCATTTTTACTATGCATTGGTTTTTGTGGTTACGGTGTTATGCAGTAAGTTTGTAGTGGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCCAGTAAAAAACAAAAGGTTATTTTGGGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTAAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTTAATTGGAGTATGTAATGAAACCGACATTTTGGAAATTGTCACAAGGGACTGAATTTTTCACTTATGAAGATATGCTTCAGTCAATTGAAGATCGCTTAGTATATGTTCACAAGGATACAGCAGCTCAAGGACAGTCATCTGTAACTCAAGGGCAGACATTTGTTGAAGCTAAAATTGGTGATTACTTCTATTTAACACATGGTAATAACGGAGTGTATGTATTAGGACAATTTACAGGTCCGATAAATTACTTCTCGAATTGGGGAGATGGATGGTCCGATCGACCATTTCGCGTAATTGCTCGCTCAAAAACGCAGGAATGTTACACAGGAATTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //