Array 1 47232-46075 **** Predicted by CRISPRDetect 2.4 *** >NZ_AANOQC020000012.1 Campylobacter coli strain CFSAN096339 CFSAN096339_contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47231 36 94.4 30 .GG................................. ACTATTATCGTTTGCTTTTGTAAGTCCTAA 47165 36 100.0 30 .................................... TGATTTTTACGAGTTAAAAAATATTATAGA 47099 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 47033 36 100.0 30 .................................... GAAAAAAATTGGTTTGTAGACCTTCCGCAT 46967 36 100.0 29 .................................... TGGTCTTGGTGGTGGGTGTTGTCACCTTT 46902 36 100.0 30 .................................... TGGAGCTACTTCTGTGGATATAAGCATAGA 46836 36 100.0 30 .................................... TAAAATTATATAAGGAATAATGCATATAAA 46770 36 100.0 30 .................................... TCAAAACTCAAAAATAATACTTTGTGGTAA 46704 36 100.0 30 .................................... CCCCCTGTTTTTCCCCCTTGTGATAAAAAT 46638 36 100.0 30 .................................... AGCCATTTTTACAACTTCTATCATTCTATC 46572 36 100.0 30 .................................... CCATGATTAAAATCAACTTTTGCTTTATAT 46506 36 100.0 30 .................................... TCTTTTGCTCTAAAATACTCGCTTATTTCC 46440 36 100.0 30 .................................... ATGGCTAGTGCATTACCTTTAGACTTGTTG 46374 36 100.0 30 .................................... TTATGATTTAATGTATAAGCAAGACTTATC 46308 36 100.0 30 .................................... TCCTTGTTTTTTAATTTATTTTTGTTATAT 46242 36 100.0 30 .................................... TAAAAGGATTATGGATATACCAGAAGATTA 46176 36 100.0 30 .................................... AAAAACAAAGCTAAAGAACAGCTAGCAGTT 46110 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //