Array 1 5325-8383 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVM02000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0156 NODE_7_length_241526_cov_35.181069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5325 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 5386 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 5447 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 5508 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 5569 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 5630 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 5691 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 5752 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 5813 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 5874 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 5935 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 5996 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 6057 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 6118 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 6179 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 6240 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 6301 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 6362 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 6423 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 6484 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 6545 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 6606 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 6667 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [6687] Deletion [6707] 6709 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 6770 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 6831 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 6892 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 6953 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 7014 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 7075 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 7136 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 7197 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 7258 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 7319 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 7380 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 7441 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 7502 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 7563 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 7624 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 7685 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 7746 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 7807 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 7868 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 7929 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 7990 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 8051 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 8112 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 8173 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 8234 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 8295 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 8356 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24929-27399 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVM02000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0156 NODE_7_length_241526_cov_35.181069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24929 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 24990 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 25051 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 25112 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 25173 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 25234 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 25295 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 25356 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 25417 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 25478 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 25539 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 25600 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 25661 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 25722 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 25783 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 25844 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 25905 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 25966 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 26027 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 26088 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 26149 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 26210 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 26271 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 26332 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 26393 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 26454 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 26515 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 26577 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 26638 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 26699 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 26760 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 26821 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 26882 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 26943 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 27004 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 27065 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 27126 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 27187 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 27248 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 27309 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 27370 29 100.0 0 ............................. | A [27397] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //