Array 1 64905-70582 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAQG01000028.1 Bifidobacterium adolescentis strain NCTC11814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 64905 33 100.0 34 ................................. ATGAAGCCACCCCCTCGGCTTGGGGAGCGTCCAG 64972 33 100.0 36 ................................. CTCACGAGATCGCGCAACGTCTCGATGATTTGGAAG 65041 33 100.0 37 ................................. AAAAAGGAAAATCTGTATTGGGGCAGCACCGTACAGG 65111 33 100.0 35 ................................. GGTACAAACGGTTACATCCCTTAGTTATCCGATAG 65179 33 100.0 35 ................................. GCTTTCGTATTGGCGACATCGTTGGCTGTGCGGTG 65247 33 100.0 34 ................................. TACAAGGTGCATCTTGATGCGGCACCAACCGACG 65314 33 100.0 35 ................................. TCCATAAGTGACGTCAGCCGAATCATGCCAGTCCG 65382 33 100.0 33 ................................. CGAGACTCCATGGGACGATGGGCGGAGTACATG 65448 33 100.0 35 ................................. CCCATTGGTCGCGGAGCCATGTGTTGAGCCGTGGG 65516 33 100.0 34 ................................. TATGACACCTTGGAAGTCTCTCAGACGCTTTTGG 65583 33 100.0 36 ................................. CTACCATACGCGCACATGCAATTCGAACCAGTCAAG 65652 33 100.0 34 ................................. ACCTTGGACGAGGCGTTTAGCCTGACCGAAGAGG 65719 33 100.0 35 ................................. TCGAGGTTGGTCAGGTCGGTGAGCCGGTCGGCGAG 65787 33 100.0 34 ................................. CCGTACCTCGGCCGCCGTATACCAGCCGTCCGTG 65854 33 100.0 34 ................................. TCTCCCTTGATGGCGTTGATGAATGTGGCGTGTG 65921 33 100.0 35 ................................. TTGCAATGGCGACGACCACGTCGCGTACGAGGCCG 65989 33 100.0 34 ................................. ACCGTCATGAAGGTTGGAAAATTGGTGATACCAG 66056 33 100.0 34 ................................. CAGGTCACTCAGGTTGAGCGGGAGGCTGTAGTTG 66123 33 100.0 34 ................................. GAGTTCAACGATGCGCGACTGCTGCGCGGCGATG 66190 33 100.0 34 ................................. CGCGACGAGGTCGGCGTGATGGTCGGACGTGGCG 66257 33 100.0 34 ................................. AGCCTGATTACGAGCGTTACCCGCAGGAGCGTCG 66324 33 100.0 34 ................................. CTACTGCGCGTCATGTCAGTCAGCCTCCCCAAGA 66391 33 97.0 34 ..............A.................. TCCTTATCTTGGAACGTATTCCTGCTGGAAGTTG 66458 33 100.0 33 ................................. GAGATGAAGGATGGCGTTGAATCATGGCGGATG 66524 33 100.0 34 ................................. TACCATGTCCCGTCATTTTTACGCTGTTTATTGG 66591 33 100.0 32 ................................. GTCTCGCAAATGGCGCGATAGCCACGCGCCTG 66656 33 100.0 33 ................................. AATCCGGAATGCACCAGCAATTACTTCCAGGTG 66722 33 100.0 34 ................................. CTAACCGTTGGGGACAAGCCGTTTTTGAATGCGC 66789 33 100.0 34 ................................. TCGGCAATCGCAAATATTGCGGCGTAGAGGGAGA 66856 33 100.0 35 ................................. ACATAAGTACCGCCGATACGGTTCACCAGCGCCGC 66924 33 100.0 35 ................................. ACATAAGTACCGCCGATACGGTTCACCAGCGCCGC 66992 33 100.0 34 ................................. CGCCATTGAGCTTTCAGATTCACTTTCTGGCAGA 67059 33 100.0 34 ................................. ATCTCCCGCCGCCACCACAACCTCATGCGCCACC 67126 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 67193 33 100.0 34 ................................. TCTCGCAGCACCAGCATCTTGACTTTGCGTATTT 67260 33 100.0 34 ................................. CGTCTGTTGACGAAGTTTTTCTTGCGCTTGCATG 67327 33 97.0 34 ......T.......................... TTATACCGGTGCAGGTACGTCGTGCAGACATCCA 67394 33 100.0 34 ................................. GTCTTCACGCCCGAGGTGATCGCATCGTGGAAGG 67461 33 100.0 35 ................................. TCCGACACTCGCCTCTACAATTCCCGCGAGGAACG 67529 33 100.0 36 ................................. TTGCCGGCTCCGAGCAGCGCTTCGGCCACTTGGTTG 67598 33 100.0 36 ................................. GGCTTCGTCTACGACCTCTTCCCAGAAGAGGCGCAC 67667 33 100.0 34 ................................. AGGGTCAGCAGCGACCCGTTGCGCTCGGTGTGGC 67734 33 100.0 34 ................................. AATGGGGTTCTCTCCGATCCAGCCGTGCTCCAAA 67801 33 100.0 33 ................................. AACGTGTCCGGCATTCCGACGTTCGCGCAGCAG 67867 33 97.0 36 ............................A.... GCCAATGGAGCGCATGGCGGCCGGTGGTGTCTGCCG 67936 33 100.0 32 ................................. GTCGATGTACGAGGTGCGTTCTTCATATTCGA 68001 33 100.0 33 ................................. TTGCTGGCATCCGCCTCTTCCCAGTTCGTGCTA 68067 33 100.0 35 ................................. ATTCAGCGCGTTGAATACGTCAACGCTCATTGCAC 68135 33 100.0 34 ................................. TATATCCCCAACTACAATGAGGCAGGGGCGGACA 68202 33 100.0 34 ................................. ATCAAGCCTGAGCCACGCCATAAGCATCAAGCGA 68269 33 100.0 34 ................................. ATGGATGAAGAGGAAGAATCCCAGCACATGCGAA 68336 33 100.0 32 ................................. TACGACACTCTGGAAATCTCTCAGACACTCTT 68401 33 100.0 33 ................................. CTCTTGACTTTTGGCGTTCCAATAGAACGCGGG 68467 33 100.0 35 ................................. TCGTACGCGGTTATGGCGCTTTCCCGCGCCTGTAT 68535 33 100.0 35 ................................. GTCAAGACCGCAGCGCAGGATACCGTCGTTGTCAA 68603 33 100.0 33 ................................. CAGAACGGAGCCATTCCCTGCCAGTCGGCATGC 68669 33 100.0 33 ................................. ATGCAGTTGGTGTCCGACATGGTCGGCGGCCTG 68735 33 100.0 34 ................................. CATGACGGTGCGGTTGGTGCCGTCCTGTGCCTGG 68802 33 100.0 34 ................................. ATCGAAGGCACCGAAGCGGGCCATAATACTCTGC 68869 33 100.0 35 ................................. GCCGAGCATGGCGACATGATTCGCCCGCAATACGC 68937 33 100.0 37 ................................. TGCTTATTGCGTCATGTGCGGCTGCATTTCCCGAAAC 69007 33 100.0 33 ................................. AGCGCCGACCTGACCAAGGCGCAGCTGAACCCG 69073 33 100.0 34 ................................. CGGTGAAGTTCGCCACGGCATGATGATCGATGAC 69140 33 100.0 34 ................................. TCCTTTAATGGTGGGTGGGCAGTCTTAGTCGCGT 69207 33 100.0 33 ................................. GTGCTTCCCGGCCACACTCCCCCGGAACCCGAA 69273 33 100.0 34 ................................. CGCTTCGGACTGTTCCATCGTCAATGGACGCCAG 69340 33 97.0 34 ............G.................... ATCGTGAGTTTCCCGCGACTCCACGCTCTCAATG 69407 33 100.0 34 ................................. TCCAAGCCTGCCGCATATCCGAATGACGGTGGCC 69474 33 97.0 34 ...................A............. TCCGACCTGGCCGCGGACGATCAGGGAGGATACG 69541 33 100.0 34 ................................. TTGCGCCATAGCTGACGAAAAGCTGCTTCCACGC 69608 33 100.0 35 ................................. CACGGTCGAGTCGCCCACGTCCATCACGCCCAGGC 69676 33 100.0 34 ................................. GGTTTGACCGGCTACGCGATTCGCGTCACGGGCA 69743 33 100.0 35 ................................. CTGCCGCAGCGTGACGAGCTGGTCACGCAGGATAT 69811 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 69878 33 100.0 33 ................................. CACAAGTCTCGCCTATAACTTAGGACACTAGAG 69944 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 70011 33 100.0 35 ................................. AATAATAGTTTCGCCATTTGCCGACGCTCTCCGGT 70079 33 97.0 34 ...................T............. GGGTTGACGTACGTGGCGGTGCCCGTCACGGTAA 70146 33 97.0 33 ...A............................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 70212 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 70279 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 70347 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 70415 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 70483 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 70550 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ===================================== ================== 85 33 99.6 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACGG # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //