Array 1 1719159-1719796 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIO01000009.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01713 2015LSAL01713_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1719159 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1719220 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1719281 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1719342 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1719403 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1719464 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1719525 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1719586 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1719647 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1719708 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1719769 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1736437-1738053 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIO01000009.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01713 2015LSAL01713_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1736437 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1736498 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1736560 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1736621 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1736682 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1736743 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1736804 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1736865 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1736926 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1736987 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1737048 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1737109 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1737170 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1737231 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1737292 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1737353 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1737414 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1737475 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1737536 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1737597 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1737658 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1737719 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1737780 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1737841 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1737902 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1737963 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1738024 29 93.1 0 A...........T................ | A [1738050] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //