Array 1 3036961-3035607 **** Predicted by CRISPRDetect 2.4 *** >NC_022544.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3036960 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3036899 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3036837 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3036776 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3036715 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3036654 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3036593 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3036532 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3036471 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3036410 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3036349 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3036288 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3036227 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3036124 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3036063 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3036002 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3035941 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3035880 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3035819 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3035758 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3035697 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3035636 29 96.6 0 A............................ | A [3035609] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3054708-3053093 **** Predicted by CRISPRDetect 2.4 *** >NC_022544.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3054707 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3054646 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3054585 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3054524 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3054463 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3054402 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3054341 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3054280 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3054219 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3054158 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3054097 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3054036 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3053975 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3053914 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3053853 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3053792 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3053731 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3053670 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3053608 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3053547 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3053486 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3053425 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3053364 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3053303 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3053242 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3053181 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3053120 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //