Array 1 2385-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZJ01000185.1 Rhodomicrobium udaipurense JA643 contig00185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2384 29 100.0 32 ............................. TACGAGGGCGGCGCGAATCCGCCGCAGGTGCT 2323 29 100.0 32 ............................. ACCGAACGCTAGCTGGGTGGAAAAACCCGAAG 2262 29 100.0 32 ............................. CGTTTTTGCTGCGATGGCGCTTAATTTTACAC 2201 29 100.0 32 ............................. ATCAGCATTTTCAATCTCCGGTATCTGTGGGT 2140 29 100.0 32 ............................. CCCCTCACCGGCACAGTCATCAGCCTCACCGA 2079 29 96.6 32 ............................C TGGTATACCACGCCCCAACAAAGCCCCGTTCC 2018 29 100.0 32 ............................. GAATTGCAGTCATGACAACTGAAACCCTTTTG 1957 29 100.0 32 ............................. GCAACGCGGCGTGCTTGACCAGATCGAGACGC 1896 29 100.0 32 ............................. CGTCTCACAGATAGCGGCATACCCGGTCAAAC 1835 29 100.0 32 ............................. ATGAACGCGAGTATCAAACCGCGTGGCGAGCT 1774 29 100.0 32 ............................. GCGTCAGCACTTTGACTTTCAACCAAATTCGC 1713 29 100.0 32 ............................. CCCTCTGCAATGGCGTCCTTACCATCGGTCGT 1652 29 100.0 32 ............................. GCGTCCGCCTACGCATCACGGCTCGACCCTCA 1591 29 100.0 32 ............................. TGATTGTCGCTCTCGAAACGCTCAATACTACC 1530 29 100.0 32 ............................. CTGTATTGTCGATATACAGGCTCGATATTCTG 1469 29 100.0 32 ............................. CAGGTTGAAATTGAGCGGGAGCCAGCGCATTA 1408 29 100.0 32 ............................. TTCGTTGATTAATTCGCCCGTTGAGTAGCGCG 1347 29 100.0 32 ............................. AAATCGTCCCTTTCGCCGCGCCGTATAGCAAT 1286 29 96.6 32 ............................A AGAAGCGATCGCGTCGTCCGTATCGCTGAAGC 1225 29 100.0 32 ............................. CCTTCGCTACGCCTCGATAATTCGTCGCATTG 1164 29 100.0 32 ............................. GCTTTATTTACCCACTCACTGGCATGAGTGCA 1103 29 100.0 32 ............................. GACCTGCCAGCACGCACGGCCGCCAGGGCAGC 1042 29 100.0 32 ............................. CTGATGGTTGGGCCACGCTACTCGCCACGCTA 981 29 100.0 32 ............................. CCGCGCTCGCCGCCGCGTTTTTGGACAACACG 920 29 100.0 32 ............................. CTAACTCAACAGGAGATTGCAACATGACCGTA 859 29 100.0 32 ............................. GCGACAACGCGCATTGACTTGTTGCTCGCATT 798 29 100.0 32 ............................. CTGCTGACCTGCGCGAACTCGCAGAACTTGCG 737 29 100.0 32 ............................. CGTCAAACATACGCTGTGCGGATGGTCTACGC 676 29 100.0 32 ............................. GAGCTTGTAAATGTGTTAATGTCCATTAAAAA 615 29 100.0 32 ............................. CTGACGAGTGCCAAACCGGAAGACACTGTGCT 554 29 100.0 32 ............................. ACTTTGACGGTGCGCGCATCATCATCCCAGAT 493 29 100.0 32 ............................. ACCAACGGCAACCACATATTTTCCTGCTAGCT 432 29 100.0 32 ............................. TTTTTCGCCGACTAGTACCGGGCAAAACTCCA 371 29 100.0 32 ............................. CGGCTGGAACCTCGCGGCGGATGTTGCTGATG 310 29 100.0 32 ............................. AATACCTACCAAATCAACCACGAAAAACCCGG 249 29 96.6 32 ............................T ATACAACGGGCGAGTTGATTAACGAACATATC 188 29 100.0 32 ............................. CACCTGCTCGCCATACGCGGGGGCTGACGCTT 127 29 100.0 32 ............................. GCGGTATCCAGCACCGTGCCGGATTTGACGTT 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CATCATTCCGCTGATCGAGGATGTGCTTAAGGCGGGCGGCCTTGAGCCTCCAGAAGAAGCGCCCGAGGGCGTGGATGCAGCCATCCCGCGCGAGGAGGCATCCGGCGATGATGGTCATCGTAACTGAGAATGCGCCGCCACGCTTGCGCGGTCGGCTGTCGCTCTGGCTGCTTGAGGTGCGCGCGGGCGTGTATGTGGGCAATTACTCACGGCGTGCGCGCGAGCGAATGTGGGGCGAGGTTTGCGCGATGATCGGCGAGGGTAACGCCGTGATCGCTTGGACTGCGGTGAACGAGGCCGGGTTCGACTTCGCAACCGTGGGTGCGAACCGGCGTGAGCAGGCCGATTTCGACGGGTTTCTGCTGGTCAAATTCAGGCCCGCGCCGCCTGCCGAAGACCCGTTGAAGCCACCGTTTTGAGCCTGCGGAACGAAGCGGGAACTTCGGTGGCGTTCTTTGACATCGTGATTCGTTCGTGCGATCAATTCGTTACGCGGAAGA # Right flank : GTTAACCTTTATTATTGGTCATCTAAAACCATTGTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2360-3131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZJ01000199.1 Rhodomicrobium udaipurense JA643 contig00199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2360 32 100.0 33 ................................ TGAAAGCTGTTCGCGGTCACGGTTGGCAGCGGC 2425 32 100.0 34 ................................ CGCACGCCCCCCCGCCAACAGCCGATCCTGGGGC 2491 32 100.0 34 ................................ GCCGTCGTGCCGTCGCCGATGGTGAGCACGTTCG 2557 20 59.4 0 ...................T------------ - Deletion [2565] 2571 32 87.5 28 .GGAG........................... CAACGGAACGCAGCGGGATCACGGCAAC 2636 32 100.0 35 ................................ TGGGATATCGGCGTTGGTGACTCGACCTGCATCTG 2703 32 100.0 34 ................................ GCTGACGGATCAACCACGATCAGCGTCCCCTGCG 2769 32 100.0 34 ................................ AGCGTCCGCGAGGAGGCGATGAGCGGCCTGCGGG 2835 32 100.0 36 ................................ CCGCGGCTGGATCGAGCCGAGCTTGCCGTTCTTCAC 2903 32 100.0 33 ................................ TCCTTCTTGCTGTATGCAGCGGCGGCTGCTGCG 2968 32 100.0 34 ................................ ACGAGCTTCTCGACGGCGGCGCGCACGTCCGGAT 3034 32 100.0 34 ................................ GCTCGCGGGAAACCGTTGAGCCTCAAGACCGCGA 3100 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 95.9 31 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : TGTGCTGGTGACCTACGACGTCAATACGATCGAAGGCGACGGCAAGGCGCGCCTCAGATCGGTGGCCAAGGCTTGCCGCGATTTCGGACAGCGCGTGCAGTTCTCCGTCTTCGAGATCGAGGTCGATCCCGCACAGTGGACGCGCCTGAAGGCGCGGCTGGAAGCCATCATCGATCCCAAGCACGACAGCCTGCGCTATTATCATCTCGGAGCGAATTGGCAGCACAAGGTTGAGCATGTTGGCGCGAAGCCCGCCGCCGACCTCGGCGGTACGCTGATCGTTTGACGAGGTATTGGCTCCTTCGCTCCTTTTTCTAAAACGAGCGCGAACCCCAAGCGTGTCGTCACTTCCCGGCTGGTTCGCGCGAGAAAGGCTCTTTGAAATCGTGAGCAATTCCTTCGGCGTGACGAGAACTTCTTCGACTTCTATGCTGCCAAAGCCGAGGTTCGCGCTGATCGGGGGCTTTTGGAATAGACGTCAATACGTTAAACAGGGAACG # Right flank : GAGATTGACGCCAAAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2743-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZJ01000204.1 Rhodomicrobium udaipurense JA643 contig00204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2742 32 100.0 33 ................................ GACTACGGCAACCAGCTCGGCGTTGCGGGGGCT 2677 32 100.0 35 ................................ CCAGTCGGAGTGCTTCGACGTGAAGTCCTTCACGC 2610 32 100.0 35 ................................ AACCGCTACGGCTGGGCCAACTCGACGCGCGCCAC 2543 32 100.0 35 ................................ GTCGCGAGTGCGCCATCTAAAATGAGCGAGCCGAA 2476 32 100.0 35 ................................ GCACAGCGTCGCCGGGTTGCCGAGCAGCCAGCGAG 2409 32 100.0 34 ................................ GTGCCTCGATAACTATCGGAAAGAGTGGGACGAC 2343 32 100.0 34 ................................ GACGGCACCGATGTTTTCGTCCTTTCGTTGCTGG 2277 32 100.0 34 ................................ TCGTATCCGAACGTTGCGAACGCGCTCGCAGATC 2211 32 100.0 34 ................................ TTCGCCAGCGACGCCTTCTGATCGGCAAGCGCAT 2145 32 100.0 34 ................................ TTCGACAGCATCGTGTGCGGTCTCGGCTGGACCG 2079 32 100.0 34 ................................ CTGATGGCGGAGGACGGCAGATTCGCGCCTCCCG 2013 32 100.0 35 ................................ TTCGTCCGGCATCACCAGTGGTTCGACTATGTGCC 1946 32 100.0 33 ................................ GATGCGAAGCTGCCGAAAGGGGCAATCGATTTG 1881 32 100.0 35 ................................ GTCGCGCAACGCTGTGCGGCGCTCAGGCTGCGTTC 1814 32 100.0 34 ................................ ATCCCGTCGAATGTGTGGGAAGGATCGATGCTGC 1748 32 100.0 36 ................................ ATCGCCGCGTCGTATCCGGCGAACGTGTTGCCCCGA 1680 32 100.0 33 ................................ CAGCGCGAACGCGACATCGCTCGGGCAGCCCTG 1615 32 100.0 36 ................................ TTGTGGCGTACAGACAGACAGACAAAGGCGCCGAAA 1547 32 100.0 34 ................................ GTTGCCGTTGTCGCCGGGCTGCAAATTCGGATCG 1481 32 100.0 34 ................................ GATGACAGTCTCGACAACGCCGCTTTTCACAAGA 1415 32 100.0 34 ................................ CTTGACCCGTTCGTATCCACCTCGCCACGGTCGC 1349 32 100.0 35 ................................ GGCGTTACGACATAGAGAGCGTCGATTCACAAGGT 1282 32 100.0 35 ................................ CTTATGGGTGCCTGGCAGCGTACCTTCTTCAGCGC 1215 32 100.0 34 ................................ ATCCAGCGCGTCATCTGCTTGATCTTGGCGGGCT 1149 32 100.0 33 ................................ CAGAAGGATCTCGCCGGGGCGGCAAGCGCAAAG 1084 32 100.0 34 ................................ TCAACTCGCTTGGGAGCGACGGGCACCTGAGCGC 1018 32 100.0 34 ................................ CCGAGCGTGCCGGAGACGACGTTTGCGTCATCCC 952 32 100.0 34 ................................ TTGTAGTCGCGGCCCCAAAGGGCGGAAAGCCCAG 886 32 100.0 35 ................................ CCCGCTCGTGCGGCTGCTTGTCGATTAAGCCCTTG 819 32 100.0 34 ................................ CGCAGACGCTTCAGCCTGTCAGTTTGGGATTCGG 753 32 100.0 33 ................................ ACGCACCCGGCGTTGGCCGTTGTCACCGGCCAA 688 32 100.0 34 ................................ CTGAAGCGGCTGAAGACATGGCGCGTGTTCGGTG 622 32 100.0 33 ................................ GATGCGAAGCTGCCGAAGGGGGCAATCGATTTG 557 32 100.0 33 ................................ TATGACAGCTCGGGCTCGCCACATATCTTTTTC 492 32 100.0 36 ................................ CAGAAGGATCTCGCCGGGGCGGCAAGCGCAAAGGAA 424 32 100.0 38 ................................ CTCAATACCCTCACACGGCTTGTGGAGTGGGTCAAAGG 354 32 100.0 34 ................................ ACGGTATAGGTTCCCTCTTCGCCCGTGCCGGTTC 288 32 100.0 33 ................................ GTTCAAGATGCGTGGCTAGTTTGGCAGGACAGC 223 32 100.0 35 ................................ CAGACCTTGCGATTGCGGCCCTTGAACTTCTCGTC 156 32 100.0 34 ................................ TCGCATCCGCGCTGGATCGTACTGAGGCGTGCCG 90 32 87.5 0 ......................CC....C.C. | ========== ====== ====== ====== ================================ ====================================== ================== 41 32 99.7 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : TTGCCGCCGATGCGGTCG # Right flank : CGCGTCCGCCCGACCGATCCGGCATCCCACCAAGGGCGATTGAGAATCGCCCTTTGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34-2319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZJ01000209.1 Rhodomicrobium udaipurense JA643 contig00209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 ............................. CGGAGGAGCCGCAGGAGCAGCGCCGCCGGTCG 95 29 100.0 32 ............................. AGACAACGCGGCCGGCCATATAGACCGACGGG 156 29 100.0 32 ............................. CCCCGCCAGCGCGGTCAAATCGGCATCCGCAG 217 29 100.0 32 ............................. GTTTTTTTGCTCACAAAATCAGCGCGTTACTT 278 29 100.0 32 ............................. CCACGGGTTTATCGCGTTCCCGTACCCGCGCA 339 29 100.0 32 ............................. CTTAGGCGGGCTCGCATGTCCGATGCAGCGGA 400 29 100.0 32 ............................. CACGGCAATCTGCCTCAGACCACCGGCACGAA 461 29 100.0 32 ............................. AGCGAATTCGGTGATGTCGATCCCTTCGTTGA 522 29 100.0 32 ............................. CACCTTCCGTACGTGGTATGGCCTACCGATCC 583 29 100.0 32 ............................. CTGGATATTGGAAAACAGATTAGAATTGCCGC 644 29 100.0 32 ............................. GCTGGCACGGCGCGCACCGAAGCGCTGATGTT 705 29 100.0 32 ............................. GCTAGGAAAGTATCGGCGCGAATGGCAAGTTC 766 29 100.0 32 ............................. GCTTTATTTACCACTCATGCCAGTGAGTGCAA 827 29 100.0 32 ............................. GTTCCGCCATCGCCGAAATTGTCGCCTGCAAA 888 29 100.0 32 ............................. TGAACGAAACTGAAACCGCGCCGCTCGATACT 949 29 100.0 32 ............................. CAGGTTAAAATTTAGCGGGAGCCAGCGCATTA 1010 29 100.0 32 ............................. ACGGGCAATTTATTGAGACTGCCCAACACATG 1071 29 100.0 32 ............................. GATGAAACGACGCCTTGGGACACGACCAAGGG 1132 29 100.0 32 ............................. CGTTTCGCGCCGCCACGATAGCCTCGAACACC 1193 29 100.0 32 ............................. TTTACAGGCCGCGCACGGGATGAATATGAGGT 1254 29 100.0 32 ............................. TCAGCATCGATCGAAACTGAGGCGCGCCACCC 1315 29 100.0 32 ............................. TGGCGGACTTACTCCGGAGCGCCGACCGAATG 1376 29 100.0 32 ............................. CTCGGCATTGAGACGGTTCCGGTTACGGTCGC 1437 29 100.0 32 ............................. AAAGCCGTCTGAGTGGTCCAGTCGCCCTTCTT 1498 29 100.0 32 ............................. ATCGCCATCACCATTGCAGGGGTGATCGCTGA 1559 29 100.0 32 ............................. TGCTACGTGATTGCCCACGATGTCACGCATTA 1620 29 100.0 32 ............................. GATTCTTGGGTCATGAGCGAACTAGGTTTGAC 1681 29 100.0 32 ............................. AGAGAGGGACACCAGCTTCTGCTTTAGCCACG 1742 29 100.0 32 ............................. CCGATTTCACGGGGGAGGGGCATTTTGGCTAT 1803 29 100.0 32 ............................. GGCGCGCAGCTACCTTAAATGGGGCGTACCGC 1864 29 100.0 32 ............................. TGTTCGGCCAAACTTTTTTGTTCGCCCGAACT 1925 29 100.0 32 ............................. CGAATAGTCGCGCAAATATTCGCTATCCCATA 1986 29 100.0 32 ............................. CCGTCTTCCACGACGGAGACGTTCCAACTCAC 2047 29 100.0 32 ............................. CTGTTTGGGGCAATCAGCACTGTAAACTGATC 2108 29 100.0 32 ............................. ACGATGCTTTTGACGAGCAGCGATTTGCCCTA 2169 29 100.0 32 ............................. CTTTCAAACATGGTAGATTTCCCGTCAGTTAA 2230 29 100.0 32 ............................. GTTCCGCCATCGCCGAAATTGTCGCCTGCAAA 2291 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GCCACACTGTGAGCAAATTCGGCACGTTCCAGTG # Right flank : GCGGTGGCGCTGCAACAGAAGATAGGCAGGTTGAGTTCCCCGCACACGCGGGAGCGTGTTTACGAAATCGCGCCACGCTGGGATAAGCACATGCTGGAAAGCATGTACGTGACCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //