Array 1 291-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUBT01000183.1 Bacillus pseudomycoides strain AFS022225 AFS022225_109_C5_Contig280_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 290 24 68.8 34 --------.C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 232 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 164 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 99 32 93.8 33 A..........A.................... CTATATATAGCCAGCGTCCTCTTTTTTATATAA 34 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 90.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TTT # Questionable array : NO Score: 8.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 847-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUBT01000219.1 Bacillus pseudomycoides strain AFS022225 AFS022225_109_C5_Contig113_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 846 29 100.0 36 ............................. TCTTTACCAATTTCAATACCATATAAAGTTTGTTCT 781 29 100.0 36 ............................. ACAGCAGCGAGCATTAGAGCGTCAAATAAAAAAAGC 716 29 100.0 37 ............................. ATCAGTAATTGCAATCTTGTTCTTAAAAGGTTACAAG 650 29 100.0 36 ............................. GAATATTGAACAAACAGGATAGAATACGATTTAATA 585 29 100.0 36 ............................. TACTCGCTTTTTGAGTATGGACCAACAAATTACTCG 520 29 100.0 36 ............................. TTCATCAAGGAAATCAAAGTAGGTCGGGTTTTAGCT 455 29 100.0 36 ............................. GTCGCATTTTCGAATCAAGTTGAGATAAATGGAATT 390 29 100.0 35 ............................. TTGACCTCAAGAGCGACTGAAATGTTAGGCTGAAG 326 29 100.0 36 ............................. ACTGTATAGATATACTCTGTTGTTCCATCTCCGATG 261 29 100.0 35 ............................. GTCAAAGGGCTGTCCGAAGTGGTACAAGCCGTATA 197 29 93.1 0 .......................A.G... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.4 36 GTTTTATAAGAACTATATGGAATGTAAAT # Left flank : TTTATTGGAGAAGATGCTTACAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTGGACTCAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCAGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTCCTTTTGAACTTTATTTCGCTAAATGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGACAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGATGAAAATATCAGG # Right flank : TGGCTGAGGCGAAAATACTTTGTGTGAAGATTTTTCTATAAGGGGTCACCTTACATGCCCATCAACTTAAGAAGGAAAATAAAATGAACTTTCGTTCATATGAACGAAAAAAACTTAAAATATTTTGTGTCCTTAAAAATGAGCATACCAAATAAACCTAGATAGGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //