Array 1 2721955-2722703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046602.1 Pseudomonas aeruginosa strain CMC-115 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2721955 28 100.0 32 ............................ TTACGGCGACCAGTTCTACCGCGAACCGACGG 2722015 28 100.0 32 ............................ AAACACGTCGGACAGATCCTGCTCACTACAGG 2722075 28 100.0 32 ............................ ACCTGCCACTCGACGTAGCCCCCGGTAAACCA 2722135 28 100.0 32 ............................ TACCAGAACCAGGTTTTCCGCACCATCCAGGG 2722195 28 100.0 32 ............................ TGATGCCACCATTCGACGCTGCACCAGAAGCC 2722255 28 100.0 32 ............................ TACAGCTTCGAGGCTTCGACGACCGCTTCCGA 2722315 28 100.0 32 ............................ TGGCAATGCGACAAGTCGTCGAATCAGCGCTC 2722375 28 100.0 32 ............................ ATTGATCAGCAGGCCGGTATTCGGTCCCATAT 2722435 28 100.0 32 ............................ ATCAGCCAGAGGCTGTCCGATTTCGGGAAGGT 2722495 28 100.0 32 ............................ CGGAGGTCGGACATCATCGGACGCTTGTTCGG 2722555 28 100.0 32 ............................ GTGCCGAGTGCCCGCGGTCGAGGTGCCGGCCT 2722615 28 100.0 33 ............................ ATTCTGGACACCACTGAATTACTGCGGTGCCCT 2722676 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2732638-2731228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046602.1 Pseudomonas aeruginosa strain CMC-115 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2732637 28 100.0 32 ............................ TAATCCCCGTCAACTCACTCCGGGGGCCGGCT 2732577 28 100.0 32 ............................ AATCAGACCCCACTCGTCCAGTTGGTCAGGAC 2732517 28 100.0 32 ............................ AGAACGAGCCACGGGTGTCGGCCTTCGACTCA 2732457 28 100.0 32 ............................ AGTAGAGCAGACAGCAAAAAGCCCGGCTGCAA 2732397 28 100.0 32 ............................ ATCATCCAACAAGAGAGCGTGTCGCGACACGA 2732337 28 100.0 33 ............................ AGTTCGCGTACACCTTGTCTTCGTCGTAGATGT 2732276 28 100.0 32 ............................ TCGCCGAGGTCCAGGAGCTACGCCGCCAGGCC 2732216 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 2732156 28 100.0 32 ............................ ACAACATCCATTCTGTTCGTGGCATGGTCGTA 2732096 28 100.0 32 ............................ TGATGATCTTGCAGAACCGCCAGGGCCGGACC 2732036 28 100.0 32 ............................ AACCAGACTCGACCCTTCGGCGATACCCTCGA 2731976 28 100.0 33 ............................ GTGCTGCTGGACCGCCACAAGGATGTCGACCTT 2731915 28 100.0 32 ............................ TCGCTCATGGCCTCCCATTCGTCGCGGGTGAA 2731855 28 100.0 32 ............................ TACCGGAAGGCTGGGAGGAAGTGCAGCTCAAC 2731795 28 100.0 32 ............................ TGAACCAGTCCGAGCTAGCTCGGCGCCTAGGG 2731735 28 100.0 32 ............................ GGAAGATGCCGAAGACGATCAGCGCGATGATC 2731675 28 100.0 32 ............................ TCCACGGTTGCGGGCTTCGCGGGCCTGGATGC 2731615 28 100.0 32 ............................ ATCGAGCGCCGGGGAGCGCTGCACGTCGCGGA 2731555 28 100.0 32 ............................ AGGAACTGCTCGTCCCAGTCCGTAGCGGCGTT 2731495 28 100.0 32 ............................ ATGTTCACGAGGTCGCGGGTAAGTTGGCGTAG 2731435 28 100.0 32 ............................ TAAAGGAACTTCAGTCCTCCACTTGGTAGATC 2731375 28 100.0 32 ............................ TTGCGGAACGAGTCCCACTGCTCCTGCGCGCG 2731315 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 2731255 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAGGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATAAGGCGTTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //