Array 1 1837963-1837735 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZB01000009.1 Clostridium botulinum A2B3 87 A2B3_87_contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1837962 30 100.0 35 .............................. TGATTTGCAAATAGAAACTAATTTATTAGGAGCAA 1837897 30 100.0 35 .............................. TTTATAAGATCTGGATTCCTTATAATAAAGTTTTC 1837832 30 96.7 35 ........G..................... GCTGTTGTTTCTGTAAGGTTTGTTTGCAATACACC 1837767 30 86.7 0 ........T...T..A............G. | A,TG [1837751,1837755] ========== ====== ====== ====== ============================== =================================== ================== 4 30 95.8 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : AATTTTAAAAATCCGAAGTTGAACAGTAACATAGGATGTATTTAAATTCTGTTATATTATTATTCACATAGGTTTTTTCTTCTCGTTGGACAGTAACATAAGATGTATTTAAATTTTTTATATTTCTCTTTTCCCTCAAAAAATAATTTTGTTGAACATTAAAATGAGATGTATTTAAATCCGGCATAAATTGCTATGTGATGGCAAGCACTATCTTGTTGAACAATAACATAAGATGTATTTAAGCAGGGAACCAAAATCTCTGATTTGGCGTGAGTCGCTTACTCTTTTGAGAAGAGGAGTAGGAGTTTCATAAATTAAATTTTTCCAGGCGTAACAAATTTAAAAAATTATTCTAGCCATTGAAGTATAAGGCTTAGGATAGGTTTTTGTTATGTATTTTTGAAAAAGCAGAATCACTTGGGAAACTTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGGAATCCAAATCTCTGATTTCGCGTGAGTCACTTACTCCTTCGAGAATAGGAGAAGGAGTTTCGTTAATGAGCATAGTATATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTTAAACCTATTTTAGATATTGAAACATAAGGATTAGAATATGTTTCATTGATGATCATAGAGTATAGCTAATTAAATTTTCCCAAGCGAATTCAAAATTAAAGCCTATTCCAAGCATTGATATATAAGCATTAGAGTATGTTTTATTATGTATTTATGAAAAATAGAAATCGGTTGGGAAAGTTTCTTTAAAACCTTGTAAAATCAATAGGTATATGATATTCTTAGAAATAAGGAATAGCCATTTTACTATGGTTGAACACTAACATAAGATGTATTTAAATGTGTAATAAAAACTACAAAAATAAGTTCCTCTTTGTGTTGAACACTAACATAGCATGTATTTAAATGCAGTTTTCCCAAAAGCAACAATATTAAGAAATG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1838644-1838216 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZB01000009.1 Clostridium botulinum A2B3 87 A2B3_87_contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1838643 30 100.0 36 .............................. AGTCGTGCCAGTTCCTTAGAAACTTTGTTTTGACTA 1838577 30 100.0 36 .............................. TAGTTATTATAATACTTTATAACAATATGTAATATT 1838511 30 100.0 36 .............................. AGCCATCCATAGAAAGTGAAATTTTAAAAATCCGAA 1838445 30 100.0 37 .............................. TCTGTTATATTATTATTCACATAGGTTTTTTCTTCTC 1838378 30 93.3 36 ....G...........A............. TTTTTATATTTCTCTTTTCCCTCAAAAAATAATTTT 1838312 30 86.7 37 ........T...A..GA............. CCGGCATAAATTGCTATGTGATGGCAAGCACTATCTT 1838245 30 86.7 0 ........A.......A...........GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 95.2 36 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : TGAAGGATTTGTTTTAAATACAAATGGAGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATCGGATATTTATCTGAAAAAGACTTATATAGTGAAGTTAGATTTGATATCCCAAATGCAAGGCTGATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACCTTTGCAAAAAACTAGAATGGGTCAATATCCATATCTAGTTTTTTGTTTTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAGTTTTCCAAGTGAATTCAAATTCAAAGCCTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTTAAAAAGCAAAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTATAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGGAACCAAAATCTCTGATTTGGCGTGAGTCGCTTACTCTTTTGAGAAGAGGAGTAGGAGTTTCATAAATTAAATTTTTCCAGGCGTAACAAATTTAAAAAATTATTCTAGCCATTGAAGTATAAGGCTTAGGATAGGTTTTTGTTATGTATTTTTGAAAAAGCAGAATCACTTGGGAAACTTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAACAATAACATGAGATGTATTTAAATTGATTTGCAAATAGAAACTAATTTATTAGGAGCAAGTTGAACAATAACATGAGATGTATTTAAATTTTATAAGATCTGGATTCCTTATAATAAAGTTTTCGTTGAACAGTAACATGAGATGTATTTAAATGCTGTTGTTTCTGTAAGGTTTGTTTGCAATACACCGTTGAACATTAGTATAATAAGATGTATTTAAGTAGGGAATCCAAATCTCTGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 69238-68944 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZB01000010.1 Clostridium botulinum A2B3 87 A2B3_87_contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 69237 30 100.0 36 .............................. TAGTACATATTATATTGATCTTTGCCCATTTGATTT 69171 30 100.0 35 .............................. GTGTTCAATCCTATCGTATCAAGCCCCGCATCTTT 69106 30 100.0 36 .............................. TTATAAATAAAAATTCGTGATTGAACTGTTTTTACA 69040 30 100.0 35 .............................. GGATTATATTCTTCACATACAGAAAGTTCTTGTAT 68975 30 93.3 0 ........A....................A | TA [68948] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ATGGCTAATGCTATAGTTAAAGGACTAGTAGGGAAAACTACAAGCAACAGCACACCAAGCGAACCAACAAATAATAATAATTGGATTAATTTAGATGGAAAAACAGGTACTATATGTACTCCAAGTGGTGTAAATATTAGAGAAAAGAAATCAACTTCTAGCAGAATATTAGGTGCTTTACCTAATGGATCAAAGGTACAATTATATCGTAAGGAAGGAGATTGGATACATATATATTATCCACCACATGGAGGGTATGTGTATGCTAAATATATAAGATATTAAGGTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAAGGATTTAAGGTAGGCTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAACCTTGTAAAATCAATACTTCTATGTTATTCTTAAAAATAAGGAATGGCTATTTTACTATA # Right flank : ATAGTAGTTGTAGCTTATGCTATAGCTATTATTTTTTATTATTTTATTGGAAAAATTATTATAATTTATATAAATTTATCATAAAAGGTATTGACTTCTTATACTACACGTAGTATAATTATAATTGTAAGGAGGTGAGAAAAAAAGGTGGTCAAATGGATAAGAAAACTAAAAAAGCTTGATAAACTACTGGGAATAGTTATCAAGCTACTGGTAAAAATAACAATCATAATAATGCTACTGAAACAGCTATATGATTTGTTATGAACACAGGGGAGGAGAACTCCTCCCTCACTCTTATAATACCACCTTGAATGATATGAGTAAAGATTTAAAAATATTATTTAAATTAATACTAAAGATAACCATTAAATTAATTATTATAGCTCTATTAGTATGCTTGATATTTAAAATAGTTATGTAGGAGGTTTTCAAATGGGAAAATCTAAACAGACAATAGCCAATCAAAACTGGGAAAATAAAAATAGAGAGTATGCTAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 56030-56261 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZB01000012.1 Clostridium botulinum A2B3 87 plasmid p1_87A2B3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 56030 29 100.0 37 ............................. GGGAGTTATTACTAACTGCATCACCTAATTTTTTTAA 56096 29 100.0 38 ............................. CAAGTGGAAGTCCTTTCAATATTTTTTTTAGTTGTTAA 56163 29 96.6 39 ................G............ TCACCCAATAATTTAGCTTCAAGGAGCTAAGACTTTCTA 56231 29 82.8 0 ............A.....ACT...A.... | G,G [56245,56248] ========== ====== ====== ====== ============================= ======================================= ================== 4 29 94.9 38 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GAAGGTCAAAGGGTTGAGCAAGATACATTTGTTTGTAAGAGATGTGGACATAAGATTAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTGATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAATATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCATATTTTAATTTTAATTAATAAATTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGACATTTGAGTAAGTTCTATATATTACCCAAAAATACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGG # Right flank : TTTAATATTTGTTTTTACAAAGCTAAATTTTAAAGAAGTTTAGCTTTATTTTTTAGGTAAAAAGCTATCGCACTAATTTTTTAGTGCGACAGCCCCATGATGATGGATAATTATAGAATTAATATACTATTGCAATAATAATATAACTATACTATAAGTAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTCTAAAAACAAATAAGAACATTTTTATTATATCTTTATTAGTTAGCAAATTGTAGTTCCCCCTTTCTATTATTTTGGTTGATTTATTAAATTTTACTTAAATATGCTATAACAAACAACATTTTAGATGCTCTAGCTTGTCTGAGCTATTTTTATTTTGAACATAAAAAAGATTGTGCAAATTAAATTCAGATTAATAATAAATTTTTTTAACACGGTATATTAAAAGAATATATCGTGTTTTTTATTTTAAAAAAATGCTGTTATACGTCTAATACA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //